Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04160 ATGCATTTGGAACCAATACATATCCTCGGAAAAAGGGAAAAAGTTTCTGGGGGTTTTCTATGGGAATCTTGGCAAGATGTTACCCTTATAATATTGATTATAGCAGCTGTGGTGTCATTGGTACTTGGAATAAAAACAGAGGGCCTGGAAGAAGGGTGGTACGACGGAGGAAGCATTGCTTTAGCTGTTTTTCTTGTCATCATAGTTACAGCTGTAAGTGATTATCGGCAATCTCTGCAGTTTCAGAACTTGAATGCAGAAAAAGAGAACATAAAATTAGAGGTCATTAGAGGTGGCAGAACAATACAAATATCGATATTTGATGTTGTTGTTGGTGATCTAGTGCCTCTTAAAATAGGAGATCAGGTTCCCGCCGATGGAGTTGTTATCACTGGTCACTCTCTTGCCATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTATTCACAAGGATCATAAAGCACCTTTTTTGATGTCTGGTTGCAAAGTAGTAGATGGAATTGGCGCTATGCTGGTAACTGGTGTTGGTATAAATACCGAGTGGGGACTGTTGATGGCAACTATCTCAGAGGATACTGGAGAAGAGACTCCATTACAGGTTCGTTTGAATGGAGTGGCTACTTTTATTGGCATAGTGGGGCTTACTGTAGCTGTTTGTGTCCTTGCTGTCCTCGTAGGAAGATACTTCTCTGGCTACACGAAAGATTTAGATGGAAAAGTACAATTTGTTGCTGGAGAGACCAGTACTAGTGAAATAATAGACGGAGTCATCAAAATTTTTACCATTGCAGTAACAATTGTGGTGGTTGCAGTGCCCGAAGGTCTACCTTTAGCAGTTATGTTAACTTTGGCATATTCGATGCGGAAAATGATGGCAGACAAAGCTTTGGTGCGAAGGTTGTCAGCGTGCGAAACTATGGGATCTGCTACAACAATTTGCAGTGATAAGACTGGAACGCTGACCTTAAATGAGATGACTGTAGTAGAGGCATATGTTGGGAGGAAGAAACTAAATCAACCAGATGACTTGACAAAAGTGAATCCGGAAGTTCTCTCTCTGATAAATGAGGGTATTGCACAAAATACGACTGGCAATGTTTTTGTGCCTAAGGATGGTGGAGAGATGGAGGTGTCAGGATCTCCTACAGAGAAGGCAATTCTTTCTTGGGCAGTGAAGTTGGGGATGAATTTTGATTTTATTAGATCAAATTCAACAATTCTCCATGTCTTCCCCTTCAACTCTGCGAAAAAGAGAGGTGGTGTTGCTGTGAAACTGCCGGACAATGTAGTACATGTACATTGGAAAGGAGCTGCGGAGATAGTTCTAGGAACATGTACTCAATATCTTGATTCTGATGGTCACTTGAAATCTATTGAAGAAGAGAAGATATTCTTCAAGAATGGTATCGAAGACATGGCTGCACAGAGCTTGCGTTGTGTTGCCATTGCATATAGATCGTATGATATCGAAAAAGTTCCATCTAATGAGGAGGAATTAAACCAGTGGTCCTTACCAGAACACGAGTTGGTCTTGCTTGCTATCGTTGGAATAAAGGATCCTTGTCGCCCTGGAGTCAAGGAAGCTGTGAAAGTATGCACTGAAGCTGGCGTTAAGGTACGCATGGTTACCGGTGACAATCTTCAAACAGCAAAAGCAATAGCTTTGGAGTGTGGAATACTGACGTCTACTGAAGAGGCTGTTGAGCCAAATATAATTGAAGGGAAGTCATTCCGTGAACTATCTGAAATCGAAAGGGAACAAGTTGCAAAAAAAATAACAGTTATGGGGAGGTCTTCTCCTAATGACAAGTTGATGCTTGTGCAAGCACTACGTAAAGGTGGTGAAGTTGTTGCTGTCACAGGAGATGGCACCAATGATGCTCCTGCACTTCATGAGGCAGATATCGGCCTTTCTATGGGCATCCAAGGAACAGAAGTTGCAAAAGAAAGTTCAGATATTATTATCTTGGATGATAACTTTGCATCAGTAGTAAAGGTTGTTCGTTGGGGTCGTTCTGTATATGCAAATATCCAGAAATTTATTCAGTTCCAGCTCACTGTTAATGTTGCGGCTCTTGTAATAAATGTTGTTGCATCAATATCTTCTGGTGATGTTCCCTTAAATGCTGTACAGCTTTTGTGGGTCAACCTTATCATGGACACACTTGGAGCTCTTGCGCTGGCTACGGAACCTCCAACAGACAGCCTTATGCACAGATCACCAGTTGGCCGAAGGGAACCTCTTATAACAAATATCATGTGGAGGAACTTGCTCGTGCAGGCCCTCTATCAAGTCATTGTTCTTCTGATTCTTAACTTCTGTGGTGAAAGTATTCTACGTAATGAGGATTCCACAGTCCATACCATACAAGTGAAGAATACTTTAATTTTCAACGCATTCGTCTTTAGCCAATTTTACAATGCTTCAACTCAGATATTCAACGAGTTCAATGCTCGAAAACCAGAAGAGATGAATGTGTTCCAGGGAGTGACTAAGAACCGTCTTTTCATGGGAATTGTTGGAATGACATTTGTGCTTCAGATAATCATCATCGAGTTCCTTGGAAAATTCACAACCACGGTGAGGCTTAGCTGGAAGTTGTGGCTTGCCTCTCTTTGTATTGGGTTTTTAAGCTGGCCTCTTGCCGTTGTTGGAAAGTTGATCCCAGTTCCCAGAACACCACTGTCCCGATATTTCTCCAAGTCACTCAGAAAATTAAAAAAGTCCAAGTCCCATGCACAACGATAG 2751 0.4188 MHLEPIHILGKREKVSGGFLWESWQDVTLIILIIAAVVSLVLGIKTEGLEEGWYDGGSIALAVFLVIIVTAVSDYRQSLQFQNLNAEKENIKLEVIRGGRTIQISIFDVVVGDLVPLKIGDQVPADGVVITGHSLAIDESSMTGESKIIHKDHKAPFLMSGCKVVDGIGAMLVTGVGINTEWGLLMATISEDTGEETPLQVRLNGVATFIGIVGLTVAVCVLAVLVGRYFSGYTKDLDGKVQFVAGETSTSEIIDGVIKIFTIAVTIVVVAVPEGLPLAVMLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNEMTVVEAYVGRKKLNQPDDLTKVNPEVLSLINEGIAQNTTGNVFVPKDGGEMEVSGSPTEKAILSWAVKLGMNFDFIRSNSTILHVFPFNSAKKRGGVAVKLPDNVVHVHWKGAAEIVLGTCTQYLDSDGHLKSIEEEKIFFKNGIEDMAAQSLRCVAIAYRSYDIEKVPSNEEELNQWSLPEHELVLLAIVGIKDPCRPGVKEAVKVCTEAGVKVRMVTGDNLQTAKAIALECGILTSTEEAVEPNIIEGKSFRELSEIEREQVAKKITVMGRSSPNDKLMLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVASISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMHRSPVGRREPLITNIMWRNLLVQALYQVIVLLILNFCGESILRNEDSTVHTIQVKNTLIFNAFVFSQFYNASTQIFNEFNARKPEEMNVFQGVTKNRLFMGIVGMTFVLQIIIIEFLGKFTTTVRLSWKLWLASLCIGFLSWPLAVVGKLIPVPRTPLSRYFSKSLRKLKKSKSHAQR 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04160 916 SUPERFAMILY Calcium ATPase, transduction domain A 92 187 IPR008250 -
Viun5g04160 916 CDD P-type_ATPase_Ca_PMCA-like 19 754 - -
Viun5g04160 916 NCBIfam calcium-translocating P-type ATPase, PMCA-type 19 891 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Viun5g04160 916 SUPERFAMILY HAD-like 312 726 IPR036412 -
Viun5g04160 916 FunFam Calcium-transporting ATPase 9 plasma membrane-type 168 338 - -
Viun5g04160 916 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 892 IPR023298 -
Viun5g04160 916 Gene3D - 311 666 IPR023214 -
Viun5g04160 916 FunFam Calcium-transporting ATPase 638 893 - -
Viun5g04160 916 PANTHER CATION TRANSPORTING ATPASE 19 891 - -
Viun5g04160 916 PRINTS P-type cation-transporting ATPase superfamily signature 536 546 - -
Viun5g04160 916 PRINTS P-type cation-transporting ATPase superfamily signature 314 328 - -
Viun5g04160 916 PRINTS P-type cation-transporting ATPase superfamily signature 645 657 - -
Viun5g04160 916 PRINTS P-type cation-transporting ATPase superfamily signature 621 640 - -
Viun5g04160 916 PRINTS P-type cation-transporting ATPase superfamily signature 138 152 - -
Viun5g04160 916 PRINTS P-type cation-transporting ATPase superfamily signature 514 525 - -
Viun5g04160 916 Gene3D - 22 879 - -
Viun5g04160 916 FunFam Calcium-transporting ATPase 324 521 - -
Viun5g04160 916 FunFam Calcium-transporting ATPase 22 79 - -
Viun5g04160 916 SFLD p-type atpase 296 673 IPR044492 -
Viun5g04160 916 Gene3D - 20 190 - -
Viun5g04160 916 FunFam Calcium-transporting ATPase 514 666 - -
Viun5g04160 916 Pfam Cation transporting ATPase, C-terminus 706 889 IPR006068 -
Viun5g04160 916 Gene3D - 324 521 IPR023299 GO:0000166
Viun5g04160 916 SFLD Haloacid Dehalogenase 296 673 - -
Viun5g04160 916 Pfam haloacid dehalogenase-like hydrolase 311 635 - -
Viun5g04160 916 Pfam E1-E2 ATPase 92 292 - -
Viun5g04160 916 ProSitePatterns E1-E2 ATPases phosphorylation site. 316 322 IPR018303 -
Viun5g04160 916 NCBIfam HAD-IC family P-type ATPase 588 701 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun5g04160 916 NCBIfam HAD-IC family P-type ATPase 252 343 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun5g04160 916 PRINTS Sodium/potassium-transporting ATPase signature 433 451 - -
Viun5g04160 916 PRINTS Sodium/potassium-transporting ATPase signature 307 328 - -
Viun5g04160 916 PRINTS Sodium/potassium-transporting ATPase signature 57 77 - -
Viun5g04160 916 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 321 518 IPR023299 GO:0000166
Viun5g04160 916 FunFam Calcium-transporting ATPase 69 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04160 Viun-Chr5 48535435 48551074 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04160 19 912 Primary Pumps ATPases AT3G21180 77.654 0.0 1406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04160 K01537 - gmx:100817367 1548.1