Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04158 ATGAGCTCCACCTCGCGTGGTTCAACCTCTTCCTCCAATGGCCATCATGCCGTCACTGTCGCTGTCGCCGTCAACAACGACGACGATGACGACTTGGTCGCTGATCCCGACGATCCTTTTGATATTACGAGTACAAAAAATGCACCTACCGAGTCCCTCAAGCGTTGGAGAGAAGCATCCTTCGTGCTCAATGCGTCCAGGCGCTTTAGATACACTCTTGACTTGAAAAAGGAAGACGAGAAAAAGGAAAAGAAACACATGATTAGATCCCACGCTCAAGTCATCAGAGCAGCTTTGCTTTTCAGGTTGGCTGGTGAACGGGAACTAGCAGCGCCGGCCCCAACTTCAGTTGGTGAGTACACAATTGGGCTCGAAGAACTTGTTTCAATGGCTAAGAATCAGAATATTTCTGCTTTACAACAATATGGAGGGGTTAAAGGCTTATCAAATTTACTCAAATCAATTCCCGATAGAGGGATTAGTGGAGATGAGGTTGATATATTAAAGAGGAAGAATGCATTTGGAACCAATACATATCCTCGGAAAAAGGGAAAAAGTTTCTGGGTGGGTTTTCTATGGGAATCTTGGCAAGATGTTACCCTTATAATATTGATTATAGCAGCTGTGGTGTCATTGGTACTTGGAATAAAAACAGAGGGCCTGGAAGAAGGGTGGTACGACGGAGGAAGCATTGCTTTAGCTGTTTTTCTTGTCATCATAGTTACAGCTGTAAGTGATTATCGGCAATCTCTGCAGTTTCAGAACTTGAATGCAGAAAAAGAGAACATAAAATTAGAGGTCATTAGAGGTGGCAGAACAATACAAATATCGATATTTGATGTTGTTGTTGGTGATCTAGTGCCTCTTAAAATAGGAGATCAGGTTCCCGCCGATGGAGTTGTTATCACTGGTCACTCTCTTGCCATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTATTCACAAGGATCATAAAGCACCTTTTTTGATGTCTGGTTGCAAAGTAGTAGATGGAATTGGCGCTATGCTGGTAACTGGTGTTGGTATAAATACCGAGTGGGGACTGTTGATGGCAACTATCTCAGAGGATACTGGAGAAGAGACTCCATTACAGGTTCGTTTGAATGGAGTGGCTACTTTTATTGGCATAGTGGGGCTTACTGTAGCTGTTTGTGTCCTTGCTGTCCTCGTAGGAAGATACTTCTCTGGCTACACGAAAGATTTAGATGGAAAAGTACAATTTGTTGCTGGAGAGACCAGTACTAGTGAAATAATAGACGGAGTCATCAAAATTTTTACCATTGCAGTAACAATTGTGGTGGTTGCAGTGCCCGAAGGTCTACCTTTAGCAGTTATGTTAACTTTGGCATATTCGATGCGGAAAATGATGGCAGACAAAGCTTTGGTGCGAAGGTTGTCAGCGTGCGAAACTATGGGATCTGCTACAACAATTTGCAGTGATAAGACTGGAACGCTGACCTTAAATGAGATGACTGTAGTAGAGGCATATGTTGGGAGGAAGAAACTAAATCAACCAGATGACTTGACAAAAGTGAATCCGGAAGTTCTCTCTCTGATAAATGAGGGTATTGCACAAAATACGACTGGCAATGTTTTTGTGCCTAAGGATGGTGGAGAGATGGAGGTGTCAGGATCTCCTACAGAGAAGGCAATTCTTTCTTGGGCAGTGAAGTTGGGGATGAATTTTGATTTTATTAGATCAAATTCAACAATTCTCCATGTCTTCCCCTTCAACTCTGCGAAAAAGAGAGGTGGTGTTGCTGTGAAACTGCCGGACAATGTAGTACATGTACATTGGAAAGGAGCTGCGGAGATAGTTCTAGGAACATGTACTCAATATCTTGATTCTGATGGTCACTTGAAATCTATTGAAGAAGAGAAGATATTCTTCAAGAATGGTATCGAAGACATGGCTGCACAGAGCTTGCGTTGTGTTGCCATTGCATATAGATCGTATGATATCGAAAAAGTTCCATCTAATGAGGAGGAATTAAACCAGTGGTCCTTACCAGAACACGAGTTGGTCTTGCTTGCTATCGTTGGAATAAAGGATCCTTGTCGCCCTGGAGTCAAGGAAGCTGTGAAAGTATGCACTGAAGCTGGCGTTAAGGTACGCATGGTTACCGGTGACAATCTTCAAACAGCAAAAGCAATAGCTTTGGAGTGTGGAATACTGACGTCTACTGAAGAGGCTGTTGAGCCAAATATAATTGAAGGGAAGTCATTCCGTGAACTATCTGAAATCGAAAGGGAACAAGTTGCAAAAAAAATAACAGTTATGGGGAGGTCTTCTCCTAATGACAAGTTGATGCTTGTGCAAGCACTACGTAAAGGTGGTGAAGTTGTTGCTGTCACAGGAGATGGCACCAATGATGCTCCTGCACTTCATGAGGCAGATATCGGCCTTTCTATGGGCATCCAAGGAACAGAAGTTGCAAAAGAAAGTTCAGATATTATTATCTTGGATGATAACTTTGCATCAGTAGTAAAGGTTGTTCGTTGGGGTCGTTCTGTATATGCAAATATCCAGAAATTTATTCAGTTCCAGCTCACTGTTAATGTTGCGGCTCTTGTAATAAATGTTGTTGCATCAATATCTTCTGGTGATGTTCCCTTAAATGCTGTACAGCTTTTGTGGGTCAACCTTATCATGGACACACTTGGAGCTCTTGCGCTGGCTACGGAACCTCCAACAGACAGCCTTATGCACAGATCACCAGTTGGCCGAAGGGAACCTCTTATAACAAATATCATGTGGAGGAACTTGCTCGTGCAGGCCCTCTATCAAGTCATTGTTCTTCTGATTCTTAACTTCTGTGGTGAAAGTATTCTACGTAATGAGGATTCCACAGTCCATACCATACAAGTGAAGAATACTTTAATTTTCAACGCATTCGTCTTTAGCCAAATATTCAACGAGTTCAATGCTCGAAAACCAGAAGAGATGAATGTGTTCCAGGGAGTGACTAAGAACCGTCTTTTCATGGGAATTGTTGGAATGACATTTGTGCTTCAGATAATCATCATCGAGTTCCTTGGAAAATTCACAACCACGGTGAGGCTTAGCTGGAAGTTGTGGCTTGCCTCTCTTTGTATTGGGTTTTTAAGCTGGCCTCTTGCCGTTGTTGGAAAGTTGATCCCAGTTCCCAGAACACCACTGTCCCGATATTTCTCCAAGTCACTCAGAAAATTAAAAAAGTCCAAGTCCCATGCACAACGATAG 3246 0.4264 MSSTSRGSTSSSNGHHAVTVAVAVNNDDDDDLVADPDDPFDITSTKNAPTESLKRWREASFVLNASRRFRYTLDLKKEDEKKEKKHMIRSHAQVIRAALLFRLAGERELAAPAPTSVGEYTIGLEELVSMAKNQNISALQQYGGVKGLSNLLKSIPDRGISGDEVDILKRKNAFGTNTYPRKKGKSFWVGFLWESWQDVTLIILIIAAVVSLVLGIKTEGLEEGWYDGGSIALAVFLVIIVTAVSDYRQSLQFQNLNAEKENIKLEVIRGGRTIQISIFDVVVGDLVPLKIGDQVPADGVVITGHSLAIDESSMTGESKIIHKDHKAPFLMSGCKVVDGIGAMLVTGVGINTEWGLLMATISEDTGEETPLQVRLNGVATFIGIVGLTVAVCVLAVLVGRYFSGYTKDLDGKVQFVAGETSTSEIIDGVIKIFTIAVTIVVVAVPEGLPLAVMLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNEMTVVEAYVGRKKLNQPDDLTKVNPEVLSLINEGIAQNTTGNVFVPKDGGEMEVSGSPTEKAILSWAVKLGMNFDFIRSNSTILHVFPFNSAKKRGGVAVKLPDNVVHVHWKGAAEIVLGTCTQYLDSDGHLKSIEEEKIFFKNGIEDMAAQSLRCVAIAYRSYDIEKVPSNEEELNQWSLPEHELVLLAIVGIKDPCRPGVKEAVKVCTEAGVKVRMVTGDNLQTAKAIALECGILTSTEEAVEPNIIEGKSFRELSEIEREQVAKKITVMGRSSPNDKLMLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVASISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMHRSPVGRREPLITNIMWRNLLVQALYQVIVLLILNFCGESILRNEDSTVHTIQVKNTLIFNAFVFSQIFNEFNARKPEEMNVFQGVTKNRLFMGIVGMTFVLQIIIIEFLGKFTTTVRLSWKLWLASLCIGFLSWPLAVVGKLIPVPRTPLSRYFSKSLRKLKKSKSHAQR 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04158 1081 ProSitePatterns E1-E2 ATPases phosphorylation site. 488 494 IPR018303 -
Viun5g04158 1081 Gene3D - 483 838 IPR023214 -
Viun5g04158 1081 FunFam Calcium-transporting ATPase 241 362 - -
Viun5g04158 1081 Pfam Ca2+-ATPase N terminal autoinhibitory domain 37 79 IPR024750 GO:0005516
Viun5g04158 1081 SUPERFAMILY Calcium ATPase, transduction domain A 264 359 IPR008250 -
Viun5g04158 1081 Gene3D - 50 102 - -
Viun5g04158 1081 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 493 690 IPR023299 GO:0000166
Viun5g04158 1081 FunFam Calcium-transporting ATPase 686 838 - -
Viun5g04158 1081 PANTHER CATION TRANSPORTING ATPASE 92 1056 - -
Viun5g04158 1081 SUPERFAMILY HAD-like 484 898 IPR036412 -
Viun5g04158 1081 PRINTS Sodium/potassium-transporting ATPase signature 229 249 - -
Viun5g04158 1081 PRINTS Sodium/potassium-transporting ATPase signature 479 500 - -
Viun5g04158 1081 PRINTS Sodium/potassium-transporting ATPase signature 605 623 - -
Viun5g04158 1081 FunFam Calcium-transporting ATPase 496 693 - -
Viun5g04158 1081 Pfam Cation transporter/ATPase, N-terminus 143 211 IPR004014 -
Viun5g04158 1081 NCBIfam HAD-IC family P-type ATPase 760 873 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun5g04158 1081 NCBIfam HAD-IC family P-type ATPase 424 515 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun5g04158 1081 FunFam Calcium-transporting ATPase 48 104 - -
Viun5g04158 1081 Pfam E1-E2 ATPase 264 464 - -
Viun5g04158 1081 NCBIfam calcium-translocating P-type ATPase, PMCA-type 132 1056 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Viun5g04158 1081 Gene3D - 166 362 - -
Viun5g04158 1081 MobiDBLite consensus disorder prediction 26 46 - -
Viun5g04158 1081 CDD P-type_ATPase_Ca_PMCA-like 167 926 - -
Viun5g04158 1081 SMART Cation_ATPase_N_a_2 141 216 IPR004014 -
Viun5g04158 1081 SFLD C1.7: P-type atpase like 468 845 - -
Viun5g04158 1081 SFLD p-type atpase 468 845 IPR044492 -
Viun5g04158 1081 SUPERFAMILY Calcium ATPase, transmembrane domain M 143 1057 IPR023298 -
Viun5g04158 1081 FunFam Calcium-transporting ATPase 9 plasma membrane-type 340 510 - -
Viun5g04158 1081 Pfam Cation transporting ATPase, C-terminus 878 1054 IPR006068 -
Viun5g04158 1081 FunFam Calcium-transporting ATPase 194 251 - -
Viun5g04158 1081 Pfam haloacid dehalogenase-like hydrolase 483 807 - -
Viun5g04158 1081 Gene3D - 194 1044 - -
Viun5g04158 1081 FunFam Calcium-transporting ATPase 810 1058 - -
Viun5g04158 1081 Gene3D - 496 693 IPR023299 GO:0000166
Viun5g04158 1081 PRINTS P-type cation-transporting ATPase superfamily signature 310 324 - -
Viun5g04158 1081 PRINTS P-type cation-transporting ATPase superfamily signature 817 829 - -
Viun5g04158 1081 PRINTS P-type cation-transporting ATPase superfamily signature 686 697 - -
Viun5g04158 1081 PRINTS P-type cation-transporting ATPase superfamily signature 793 812 - -
Viun5g04158 1081 PRINTS P-type cation-transporting ATPase superfamily signature 486 500 - -
Viun5g04158 1081 PRINTS P-type cation-transporting ATPase superfamily signature 708 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04158 Viun-Chr5 48535435 48552359 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04158 8 1077 Primary Pumps ATPases AT3G21180 74.194 0.0 1623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04158 K01537 - gmx:100817367 1806.57