Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04153 ATGCATTCCACCATCTTCACAAGGTGCCTTCTTTTCTTCTCTTTCCTCTTTCATGCTGTCTCTGCACTCACCTCCGATGGCCTCACCCTGTTATCTCTCACGACCCACTGGAACTCCGTGCCTCCTTCCATAAACACCACGTGGCTTGCCTCTGATTCCACTCCATGCGCCTCTTGGGTAGGAGTTCAATGCCACCATACCCACCATGTCATCTACCTTAACCTCACAGGTTATGGGATTTCTGGTAAGTTAGGTCCTGAAATTGGAAACATTTCTCGCCTAAACTACTTAGACCTTACAAATAACAACCTCAGTGGCCCAATACCTCACTCCTTCAAAAACTTGCACAGCCTCCAGTTTCTCAGCCTTGCCAATAATCAGCTATCTGGTGAAATTCCACATTCCTTGTCTCAAATACCTGTTCTGGATACTATTGATCTATCAAATAACCTTTTAAGCGGTTCCATTCCCACCAGTATTGGGAACATGTCTGAGCTTTTGCTGTTGTATCTTCAGAGTAACCAGTTGTCTGGGACAATTCCTTCATCCATTGGGAATTGCAGTAAATTGCAAGAATTGTGTCTGAACACGAATCAGTTGGAGGGTGTACTGCCTCAGAGTCTAGATAATCTCGATCATCTGGAATATTTTGATGTCTCCGATAATAGACTTACGGGTACAATTTCTTTGGGTTCAACTAATTGTAAAAATTTAGTAGTTTTGGTTCTCTCAGACAATGACTTTAGTGGTGGCCTTCCCTCAAGCCTGGGGAACTGTAGTAGTTTATCGGAATTTTTTGCTGTGAACTGCAATTTGGTGGGGAATATTCCACCCTCCTTTGGGCTACTGACCAAGCTTTCTATTCTATGCCTTCCGGTGAACCATTTATCTGGAAAAATACCTCCAGAAATTGGGAACTGCAAGTCTCTGACAGATTTAGAGCTGTATTCCAATCGGCTTGAGGGTAACATTCCAAGTGAATTGGGAAAACTAAGAAAACTGGTGGATTTGCAATTGTTTTCAAATCAATTGACTGGTGAAATTCCACTCAGCATCTGGAAGATTAAAGGTCTTCAGTCTCTGCATCTGTATAATAATAGTCTTTCTGGAGAATTGCCATTGGAGATTGCAGAGCTCAAGCAGCTGAAAAACATCTCTTTGTTTAGCAACCAGTTTTCCGGTGTCATACCTCAAAGCTTGGGAATTAACAGCAGTTTAGTTCTGTTGGACTTCACAAGTAATAAATTCACTGGCAACATCCCACCAAATCTGTGTTTTGGCAAGAAGTTAAAGATCCTGAATTTGGGCATTAATCAACTTCAAGGTAGCGTACCTCCTGATGTTGGGAGCTGTACAACACTTACAAGATTAATCCTCAAACAGAATAATTTTACTGGGCCTCTTCCTCATTTTAAGAGCTGTCAAAATCTCGTTTATATGGAAATTGGCAACAACAAAATTCATGGAGCAATTCCATCAAGTTTGGGAAACTGCACACGTATCACTGACTTAATTCTGTCCATGAACAAATTTACAGGGGCAATACCATCAGAGCTAGGGAACCTAGTGAATCTTCGGACTTTGAATCTCGCTCACAATAACTTAGAAGGTCCTTTGCCCTCTCAGCTATCAAAGTGCACCAGAATGGACAGGTTTGATGTCGGATTCAATTTCCTAAATGGTTCATTGCCATCAAGTCTGCAGAGCTGGACAGAGCTAACCACATTAATTTTGAGCGAGAATCGCTTTAGTGGGGGCCTCCCGTCTTTCTTGTCGGAATTCAAAATGATTTCTGAGCTACAACTTGGTGGCAATGTGTTCGGAGGCAAAATTCCCGTATCAGTTGGAGCAATGCAGAAATTGATCTATGGTTTGAATCTAAGTTCAAATAGGTTGACTGGTGAAATTCCTGTGGAGATTAGAAACCTGAAAATGTTGCGAACACTGGATCTGTCTCAGAACAATTTGACAGGAGGCATAGAAGTTCTTGGTGACCTCATCTCCTTAGTGGAACTCAATATTTCATACAATTCTTTTCGTGGTATTGTACCAAAGACGCTGATGAAGTTTCTTAATTCTTCCTTGTCATCGTTCCGGGGCAATCCTGGCCTCTGCATCAGATGTTCAGCGTCAGATTGCTTGGCTTTCTCGGAAAGAAGCTCTCTAAAATCATGCGATGACAAATCTACTAAACACAAAGGCTTGAGTAAAATTCAAATTGTGAAGATGTTTCTTGGATTGTCCATATTTCTTGGTTTGGGGTTGCTGGCATTAGTTTGTGTTGTTGTTTTTGAGAGAATAGCTAAGCAGGAAAACAATATCTCTTCTGAACAGGGTTCTTCATACCTTCTTAACAAAGTCATGGAGGCCACAGCGAACCTAAATGATCGATATATTATTGGTAGAGGAGCTCATGGAATTGTTTATAAAGCTCTGATAGGTCCAGACAAAGCTTTTGCGGTGAAAAAGATAGGATTGGCTGCGAGCCAAGGTAAGAACTCGAGCATGGTCAGAGAGATTCAGACCCTTGGGAAAATCAGGCATCGAAATCTAGTCAAATTGGAAGACTTTTGGTTGAGAAAAGATTGTGGTATAATTTTGTACAGCTACATGGAAAAGGGAAGTCTCCATGATGTTTTGCATGAAAGGACACCACCACCAACCTTAAAGTGGAGTGTTCGGTATAAGATAGCTGTTGGAATTGCTCATGGATTAGCTTATCTCCACTATGACTGTGACCCTCCCATTGTGCACCGAGACATCAAGCCCAGCAATATTCTTTTAGACTCTGACATGGAGCCTCACATTGCTGACTTTGGTATTGCCAAACTTCTGGAACAGTCTTCTCCTGCTTCAAATACTTCCATTGTTGTGCCGGGTACTATTGGTTATATTGCTCCAGAGAATGCTTATGCAACAACAAGTAGTAGGGAGTGTGATGTGTACAGTTACGGAGTTGTTTTGCTTGAGCTGATAACAAGAAAGAAAGCAGCCACAGATCCTTCCTACATGGAGGGTGGTGTTTTGGTGGATTGGGTTAAATCTGTGTGGAGGGAAACAGCAGAAATTCATCAAATTGCTGATTCTATCCTTTCAGGGGAATTTGCAGATACCCATATAATGGAAAACGTTACCAAAGTGCTTATGGTTGGTTTGAGATGTACTGAGAAGGATCCACACAAGAGACCCACAATGAGAGATGTTATTAATCAATTGTCAGATTCCAATCCACGAACAAGAAGCACAAAGGGGTAG 3255 0.4175 MHSTIFTRCLLFFSFLFHAVSALTSDGLTLLSLTTHWNSVPPSINTTWLASDSTPCASWVGVQCHHTHHVIYLNLTGYGISGKLGPEIGNISRLNYLDLTNNNLSGPIPHSFKNLHSLQFLSLANNQLSGEIPHSLSQIPVLDTIDLSNNLLSGSIPTSIGNMSELLLLYLQSNQLSGTIPSSIGNCSKLQELCLNTNQLEGVLPQSLDNLDHLEYFDVSDNRLTGTISLGSTNCKNLVVLVLSDNDFSGGLPSSLGNCSSLSEFFAVNCNLVGNIPPSFGLLTKLSILCLPVNHLSGKIPPEIGNCKSLTDLELYSNRLEGNIPSELGKLRKLVDLQLFSNQLTGEIPLSIWKIKGLQSLHLYNNSLSGELPLEIAELKQLKNISLFSNQFSGVIPQSLGINSSLVLLDFTSNKFTGNIPPNLCFGKKLKILNLGINQLQGSVPPDVGSCTTLTRLILKQNNFTGPLPHFKSCQNLVYMEIGNNKIHGAIPSSLGNCTRITDLILSMNKFTGAIPSELGNLVNLRTLNLAHNNLEGPLPSQLSKCTRMDRFDVGFNFLNGSLPSSLQSWTELTTLILSENRFSGGLPSFLSEFKMISELQLGGNVFGGKIPVSVGAMQKLIYGLNLSSNRLTGEIPVEIRNLKMLRTLDLSQNNLTGGIEVLGDLISLVELNISYNSFRGIVPKTLMKFLNSSLSSFRGNPGLCIRCSASDCLAFSERSSLKSCDDKSTKHKGLSKIQIVKMFLGLSIFLGLGLLALVCVVVFERIAKQENNISSEQGSSYLLNKVMEATANLNDRYIIGRGAHGIVYKALIGPDKAFAVKKIGLAASQGKNSSMVREIQTLGKIRHRNLVKLEDFWLRKDCGIILYSYMEKGSLHDVLHERTPPPTLKWSVRYKIAVGIAHGLAYLHYDCDPPIVHRDIKPSNILLDSDMEPHIADFGIAKLLEQSSPASNTSIVVPGTIGYIAPENAYATTSSRECDVYSYGVVLLELITRKKAATDPSYMEGGVLVDWVKSVWRETAEIHQIADSILSGEFADTHIMENVTKVLMVGLRCTEKDPHKRPTMRDVINQLSDSNPRTRSTKG 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04153 1084 ProSitePatterns Protein kinases ATP-binding region signature. 800 823 IPR017441 GO:0005524
Viun5g04153 1084 Gene3D Ribonuclease Inhibitor 24 181 IPR032675 -
Viun5g04153 1084 Gene3D Ribonuclease Inhibitor 333 403 IPR032675 -
Viun5g04153 1084 Gene3D Ribonuclease Inhibitor 264 332 IPR032675 -
Viun5g04153 1084 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 135 231 - -
Viun5g04153 1084 SMART LRR_typ_2 115 139 IPR003591 -
Viun5g04153 1084 SMART LRR_typ_2 188 210 IPR003591 -
Viun5g04153 1084 SMART LRR_typ_2 163 187 IPR003591 -
Viun5g04153 1084 SMART LRR_typ_2 522 546 IPR003591 -
Viun5g04153 1084 SMART LRR_typ_2 643 665 IPR003591 -
Viun5g04153 1084 SMART LRR_typ_2 666 689 IPR003591 -
Viun5g04153 1084 Gene3D Ribonuclease Inhibitor 182 263 IPR032675 -
Viun5g04153 1084 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 761 870 - -
Viun5g04153 1084 Pfam Protein kinase domain 799 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g04153 1084 Gene3D Ribonuclease Inhibitor 404 713 IPR032675 -
Viun5g04153 1084 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 428 714 - -
Viun5g04153 1084 SUPERFAMILY Protein kinase-like (PK-like) 778 1072 IPR011009 -
Viun5g04153 1084 ProSitePatterns Serine/Threonine protein kinases active-site signature. 916 928 IPR008271 GO:0004672|GO:0006468
Viun5g04153 1084 FunFam Serine/threonine-protein kinase-like protein CCR4 871 1084 - -
Viun5g04153 1084 ProSiteProfiles Protein kinase domain profile. 794 1079 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g04153 1084 MobiDBLite consensus disorder prediction 1068 1084 - -
Viun5g04153 1084 MobiDBLite consensus disorder prediction 1058 1084 - -
Viun5g04153 1084 SUPERFAMILY L domain-like 378 716 - -
Viun5g04153 1084 SMART serkin_6 794 1079 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g04153 1084 SUPERFAMILY RNI-like 73 423 - -
Viun5g04153 1084 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 233 320 - -
Viun5g04153 1084 Gene3D Phosphorylase Kinase; domain 1 763 870 - -
Viun5g04153 1084 ProSiteProfiles Leucine-rich repeat profile. 645 667 IPR001611 GO:0005515
Viun5g04153 1084 Gene3D Transferase(Phosphotransferase) domain 1 871 1083 - -
Viun5g04153 1084 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 326 424 - -
Viun5g04153 1084 Pfam Leucine rich repeat 476 535 IPR001611 GO:0005515
Viun5g04153 1084 Pfam Leucine rich repeat 93 152 IPR001611 GO:0005515
Viun5g04153 1084 Pfam Leucine rich repeat 168 224 IPR001611 GO:0005515
Viun5g04153 1084 FunFam Leucine-rich repeat receptor-like kinase 28 134 - -
Viun5g04153 1084 PANTHER UNNAMED PRODUCT 429 998 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04153 Viun-Chr5 48525104 48529127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04153 19 1081 Receptor kinase-like Gene Family AT1G73080 50.864 0.0 1006
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun5g04153 Pkinase 2.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04153 - - vum:124843252 1689.47