Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04146 ATGGCCACTGAAACAGAACAGGGGAAGGACTTCATTTTCAGGTCCAAGCTTCCTGATATATACATCCCCAAACACCTTCCCCTCCACTCTTACTGCTTCCAAAATCTGCAGGACCACGCCTCACGCCCCTGCTTGATCAATGCCCCCACCGGAAAACTCTACACCTACTCCGACGTCGACGCCACCGCCCGAAAAGTCGCCGCCGGCCTCGACAGATTCGGCGTGCGACAGGGCGAGGTCATCATGATCCTTCTCCCCAACTGCCCCGAATTTGTCTTCGCGTTTCTCGGCGCGTCTTATCGCGGCGCCGTGGCCACTGCGGCCAACCCGTTCTTCACTCCGGCGGAGATAGCGAAGCAAGCCAAGGCGTCCAAGGCCAAGGTGCTCATCACGCAGGCCTCTTACTACGAAAAGGTGAGGGAGCTGGAGGAGGTGAGGTTGGTGTTCGTGGACTCGTGTCCGGCAGCGGAGGCGGACGGCGGTCACGTCCATTTCTCGGAGTTGTGTGAGGGCGGCGGCGTGATGGATGAGGTGGAGATAAAAGCGGATGACGTGGTGGCATTGCCGTATTCGTCGGGCACAACGGGGCTTCCGAAAGGTGTAATGCTCACGCACAAGGGACTCGTGACGAGCATTGCTCAGCAGGTCGACGGCGAGAATCCGAACCTCTACTACCACTTCGACGACATTATCCTCTGCGTGCTTCCCCTGTTTCACATATACTCCTTAAACTCTGTTCTCCTCTGTGGCTTGCGTTCCAAGGCCGCGATTCTCCTCATGCCGAAGTTCGACATCAACGCCCTCCTCGCCCTCATTCACAAACACAGAATCACCGTTGCCCCCGTCGTGCCACCCATCGTTCTCGCCGTTGCCAAGTCACCGGATCTCGCCAACTACGACCTCTCTTCCATCAGGCTCTTCAAGTCCGGCGGAGCCCCTCTCGGAAAAGAGCTGGAAGACACTGTGAGGACCAAATTCCCCAACGCCAGACTCGGGCAGGGTTACGGTATGACCGAGGCAGGCCCTGTGCTCACAATGTCCTTAGCTTTTGCTAAAGAACCCATGCACGTGAAAGCAGGTGCATGCGGAACCGTTGTGAGAAACGCAGAGATGAAGATCGTGGATCCTGAAACCTCCCAATCCCTACCTCGAAACCAGTCCGGTGAAATCTGCATAAGAGGCGACCAGATCATGAAAGGTTATCTGAACGACAAAGAGGCTACAGAGAGAACGATCGACAAAGATGGTTGGTTGCACACAGGTGACATCGGTTACATCGACGATGACGATGAGTTATTCATCGTCGATAGGTTAAAGGAACTCATCAAATACAAAGGCTTTCAGGTGGCTCCGGCTGAACTCGAAGCCCTTCTTCTCACTCATCCTAACATCTCTGACGCCGCCGTCGTTCCAATGAAGGATGAAGCGGCGGGAGAAGTACCTGTGGCATTTGTGGTGAGATCAGATTCTTCCATCGACACAACTCAGGATGAAATCAAGAACTTCATTTCCAAACAGGTGGTGTTTTACAAGAGAATAAACACAGTATTCTTCGTTGATGCAATTCCCAAGTCACCGTCAGGCAAAATCTTGCGTAAGGATCTACGAGCACAGCTAGCAGCACCAGCACCAGCAGTTTTATCAAAATGA 1650 0.5382 MATETEQGKDFIFRSKLPDIYIPKHLPLHSYCFQNLQDHASRPCLINAPTGKLYTYSDVDATARKVAAGLDRFGVRQGEVIMILLPNCPEFVFAFLGASYRGAVATAANPFFTPAEIAKQAKASKAKVLITQASYYEKVRELEEVRLVFVDSCPAAEADGGHVHFSELCEGGGVMDEVEIKADDVVALPYSSGTTGLPKGVMLTHKGLVTSIAQQVDGENPNLYYHFDDIILCVLPLFHIYSLNSVLLCGLRSKAAILLMPKFDINALLALIHKHRITVAPVVPPIVLAVAKSPDLANYDLSSIRLFKSGGAPLGKELEDTVRTKFPNARLGQGYGMTEAGPVLTMSLAFAKEPMHVKAGACGTVVRNAEMKIVDPETSQSLPRNQSGEICIRGDQIMKGYLNDKEATERTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPNISDAAVVPMKDEAAGEVPVAFVVRSDSSIDTTQDEIKNFISKQVVFYKRINTVFFVDAIPKSPSGKILRKDLRAQLAAPAPAVLSK 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04146 549 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 439 - -
Viun5g04146 549 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Viun5g04146 549 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 537 - -
Viun5g04146 549 CDD 4CL 22 535 - -
Viun5g04146 549 FunFam 4-coumarate--CoA ligase 2 440 542 - -
Viun5g04146 549 Gene3D - 10 439 IPR042099 -
Viun5g04146 549 SUPERFAMILY Acetyl-CoA synthetase-like 12 542 - -
Viun5g04146 549 Gene3D - 440 541 IPR045851 -
Viun5g04146 549 Pfam AMP-binding enzyme 35 444 IPR000873 -
Viun5g04146 549 Pfam AMP-binding enzyme C-terminal domain 453 529 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04146 Viun-Chr5 48506828 48509111 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04146 5 507 Monolignol Biosynthesis Gene Families AT1G51680 69.804 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04146 K01904 - gmx:547944 878.626