Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04138 ATGGAATTTGAGAGTTACGAGGATGTCTATTACTTCTATAATTGGTACGCTAAGGAACAGGGATTTGGGATTAGGGTCACAAATACCTGGTACCGCAAGACTAAGGAACGTTACAGAGCAAAACTTAGCTGCAGCAGCGCAGGCTTCAAGAAAAGAACGGAGGCTAATCGCCCCAGACCCGAAACCAGAACTGGTTGTCCTGCTATGATCAAGTTCAGGTTGATGGATTCCACAAGATGGAGAATTATTGAAGTTGAGCTTGACCACAATCACTTGATTAACCCCACCAGTGGCAAGTTTTACAAGTCCCATAAGCAAGTTGCTCTTGGCACCAAAAGAACCTTCCACTTAGATGCTACTGCTGCTCAACAGGTTCACAAAATCAGGATGTTTCGAACTCTCATAATCGATGCTGAAGATGATGCTGATGAAGGGAAATCTCCAAATCCAAAGGGCCTCTACTCCAACAATCAGTTGAAGCTGAAGAAAGGAGATGCCGAAGCAATTTTGAACTTTTTCAGTCACCAGCAATTGGCAGATCCAGACTTCTTCTACGTGGTTGATGTCAATGAGAGGGGGTGTTTCAGGAACTTGTTCTGGGCTGATGCAAAATCCAGGGTTGCATACAGTTATTTCAGTGATGTTGTAGCAATTGACACTACATGTTTGAACGGTGCATATGAAGTTCCTCTGGTTATGTTCCTTGGGAAAAACCATCACAAACAATCCATCTTGTTTGGCTGTGGATTGCTTGCTTGTGAATCTGTTGAATCATACACTTGGCTGTTCAGGGCGTGGCTTACTTGTATCTTAGGACGCCCCCCACAAGTTATCATCACCAACCAATGTGGAATCTTGCAAACTGTGGTTGCTGATGTCTTTCCAAGATCTACACATTGCCTTTGCTTGTTTGATATCATGCAAAAAGTTCCAGAAAAACTGGGAACCTGCGTACACTATGAAGCAATCAATGCAGCTTTGAGTAGAGCAGTATATTCCTCTCTAAGGGCTGAGGAATTTGAAGCAACTTGGGAGGATATGATGAAAAGCAGCGAAATTAGAGGCAATAAATGGCTGCAATCTTTGTATGAGGAACGGAAACGGTGGGCTCCAGTTTATCTGAAGGAAATCTTCTTGGCAGGAATATTTTCAGTTCAACAAAGCGATGCTGTATCATTTTTCTTTCATGGGTACCTCGATGAACAGACTTCTTTGAAAGAATTTATTGAAAAATATGATCAGACTTTACAGACAAAGCGACAACTTGAAGCTTTGGCAGATTTGGATTCAAAATCTTGTAGCTTTGCACCAAAGTCGAGGTCTTACTTTGAATTGCAGGTTTCAAAGTTATATACCAGTGAAATACTAAGAATGTTTGAAAGGGAAGTGGAAGGAATGTTTTCATGCTTTAACTCGAGACAGATAAATGTTGATGGACCGGTGATGACGTACATTGTGGAAGAACAAGTTGAAGTTGACGGAAATCACAGAGGTGCAAGAGATTATGAGGTGTGTTATAATGAAGCAGAAATGGAGGTGTTTTGCATCTGTGGCCTGTTCAATATCAGAGGTTACTTGTGCAGGCATGCTTTGTTTATTTTAAGCCAAAATGGGATAAAAGAGATCCCAGCTCAGTACATTGTTTCACGGTGGAGAAAAGATGTGAAACGGAGCAATGTGTACGATCACAACTGTGGTGGAATTGATATAAGTAATCCAGTTCATAGGTATGATCATTTATACAGACAGATTGTGAAGGTTGTAGAGGAAGGTAAGAAATCTCACGATCATTACAGGACTGCACTACAAGCAATGGAAAATATATTGAGGAAGCTTCATATTGTAACCGTTGAGGATCCCGACAAAATAATGTACAAGCATTGA 1884 0.4119 MEFESYEDVYYFYNWYAKEQGFGIRVTNTWYRKTKERYRAKLSCSSAGFKKRTEANRPRPETRTGCPAMIKFRLMDSTRWRIIEVELDHNHLINPTSGKFYKSHKQVALGTKRTFHLDATAAQQVHKIRMFRTLIIDAEDDADEGKSPNPKGLYSNNQLKLKKGDAEAILNFFSHQQLADPDFFYVVDVNERGCFRNLFWADAKSRVAYSYFSDVVAIDTTCLNGAYEVPLVMFLGKNHHKQSILFGCGLLACESVESYTWLFRAWLTCILGRPPQVIITNQCGILQTVVADVFPRSTHCLCLFDIMQKVPEKLGTCVHYEAINAALSRAVYSSLRAEEFEATWEDMMKSSEIRGNKWLQSLYEERKRWAPVYLKEIFLAGIFSVQQSDAVSFFFHGYLDEQTSLKEFIEKYDQTLQTKRQLEALADLDSKSCSFAPKSRSYFELQVSKLYTSEILRMFEREVEGMFSCFNSRQINVDGPVMTYIVEEQVEVDGNHRGARDYEVCYNEAEMEVFCICGLFNIRGYLCRHALFILSQNGIKEIPAQYIVSRWRKDVKRSNVYDHNCGGIDISNPVHRYDHLYRQIVKVVEEGKKSHDHYRTALQAMENILRKLHIVTVEDPDKIMYKH 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04138 627 Pfam MULE transposase domain 215 309 IPR018289 -
Viun5g04138 627 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 613 IPR031052 GO:0006355
Viun5g04138 627 Coils Coil 405 425 - -
Viun5g04138 627 Pfam SWIM zinc finger 509 535 IPR007527 GO:0008270
Viun5g04138 627 SMART 26again6 513 540 IPR006564 GO:0008270
Viun5g04138 627 ProSiteProfiles Zinc finger SWIM-type profile. 502 538 IPR007527 GO:0008270
Viun5g04138 627 Pfam FAR1 DNA-binding domain 12 94 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04138 Viun-Chr5 48477837 48480560 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Viun5g04138 MULE 9.2e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04138 - K17604 gmx:100796267 1101.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g04138 5 48477837 48480560 Viun5g04138 5 48477837 48480560 ECH