Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04134 ATGAAGAAGACGAATGCGTTGTCGGTCTCAACCACACGCACTTACAGTTCTCTCTACTTCAATCCTCTGAACCAGCCCAGCCACTGCCGAAGCTCCAGCACCGACTGTGTCAGAAAATCTCAGTTTGAATTTGAAGATGAACACCCCGACAAAGAAAACCAAGATTTCAATGTCAATGTCAACAAGCCCAAGCCTTTCAGGTCTCTCTCCACTGACAGAATCTTGAAGCCCACCTCGCTTGAATTCTGCATGCAGATGAACCACTTTCAATCCTCCCTCAACATTTGGGACTACTCTGATTCCGAGTCCGCTCCTGCTTCATCCTGGTCCACACTGCCCAACAAGTCCTTGATCTGTAGACCCTTGCCCTTAGATGTTGGAAGGTGCACATGTTTTATTCTGAAGGAGCCAACGCCACCTGGACTATCAGGGGGCACTTTCTTCTCTCTTTATACCAATGAAGGCCAGGGGCGGCAGAACAGGAAGCTGGCCGTGGCCCACCACAAACGGCGGAATGGGAAGTCTTACTTCGCCGTGGCTCAGAATGTAAAAGGATTACTCTCCCATTCTGATGATACTTTTCTTGGCACAGTAACAGCTAACCTCATCGGCTCAAAATACTACATCTGGGATCAGGGGTATCGTCATAATTCCCGTGGTAAACAACCAAAGCCACCTCTTGCTGTTGTGACCTATATACCCACCATAACAACGTGTACAGGAAGTCACAGAAGCATGAGAGCGTATGTACCCAAGCATCAATGCATGCCACTGAAGAACACAAACCAGGTACAACATATAAAGGGATTGCCAATGAATTGGGAGGGAAAGGTGGACAAAGTCCATCAACTGTTCTCAAAGGCTCCACATTACAACAAGATTTCAAAGCAATACGAGCTTGACTTCAGAGATAAAGGAAAAGCAGGACTCAAAATCCAAAGATCGGTTAAAAATTTCCAGCTAACTTTAGAGGAGAATGGGAATCAGACGATACTGCAGCTGGGGAGGGCAGGAAAATCAAAATTCGTCATGGACTACAGGTACCCTTTGACAGGTTACCAGGCGTTTTGCATGTGTTTAGCTTCCATGGATGCAAAGCTCTGTTGCACAGTGTAA 1116 0.4668 MKKTNALSVSTTRTYSSLYFNPLNQPSHCRSSSTDCVRKSQFEFEDEHPDKENQDFNVNVNKPKPFRSLSTDRILKPTSLEFCMQMNHFQSSLNIWDYSDSESAPASSWSTLPNKSLICRPLPLDVGRCTCFILKEPTPPGLSGGTFFSLYTNEGQGRQNRKLAVAHHKRRNGKSYFAVAQNVKGLLSHSDDTFLGTVTANLIGSKYYIWDQGYRHNSRGKQPKPPLAVVTYIPTITTCTGSHRSMRAYVPKHQCMPLKNTNQVQHIKGLPMNWEGKVDKVHQLFSKAPHYNKISKQYELDFRDKGKAGLKIQRSVKNFQLTLEENGNQTILQLGRAGKSKFVMDYRYPLTGYQAFCMCLASMDAKLCCTV 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04134 371 SUPERFAMILY Tubby C-terminal domain-like 106 370 IPR025659 -
Viun5g04134 371 PRINTS Tubby superfamily signature 348 370 IPR000007 -
Viun5g04134 371 PRINTS Tubby superfamily signature 194 218 IPR000007 -
Viun5g04134 371 PRINTS Tubby superfamily signature 327 346 IPR000007 -
Viun5g04134 371 PRINTS Tubby superfamily signature 307 323 IPR000007 -
Viun5g04134 371 PANTHER TUBBY-RELATED 83 368 - -
Viun5g04134 371 Pfam Tub family 120 364 IPR000007 -
Viun5g04134 371 Gene3D Tubby Protein; Chain A 110 370 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04134 Viun-Chr5 48458469 48460863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04134 66 264 TUB Transcription Factor Family AT1G16070 57.078 1.23e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Viun5g04134 Tub 4.9e-41 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04134 K19600 - gmx:100803500 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g04134 5 48458469 48460863 Viun5g04134 5 48458469 48460863 ECH