Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04133 ATGGCTGCCAAAACCTCACACAAAACCCTCAGCGTCGACGCTCCCATGCTCAAGAACAAGAAGAAGCGCCCACGCAAAACCCTTCCAAGAGACACTCCCTTGCCACGAACCTCTCCTTACAGGGGTGTTACCAGGCATAGATGGACAGGTCGATATGAGGCTCATCTCTGGGATAAGACTTCATGGAATCAATCGCAGAACAAGAAAGGAAGACAAGTATATCTGGGGGCATACGACGATGAAGATGCTGCGGCACGTGCTTATGATTTGGCAGCATTGAAGTATTGGGGTTCGGAAACCGTCCTCAATTTCCCTCTATCAAATTATGAAGAGCAGCTTAAGGAGATGGAGGATCAATCTAAAGAAGAGTATATCGGATCCTTAAGAAGAAAAAGTAGCGGTTTCTCTCGGGGAGTCTCAAAATTCAGAGGCGTGGCAAGACACCACCACAATGGAAGATGGGAAGCACGAATTGGCAGAGTCTTCGGCAATAAATATCTATACCTTGGAACTTACGGTACAGAAGAAGAAGCAGCAGTGGCGTACGATATGGCGGCAATAGAATACCGTGGACTTAATGCTGTTACCAACTTTGACCTCAGTCGTTATATGAAATGCCTACGTCCAAAAGACCAATCTCAACCTCTAATTCAAGCCCAACATCACGGCCCAAGCCCAACCACACCATCTGGATCTGAATCTCAAAATGCCACCGCAGCATTGGGCCCTCCACCGCCGTCGCCGCCACCTTCTTCACCCTCCACCTCAAATCCTCCTCCTCCTGCTCCTCGCACATTCCCCGAAGATATTCAAACTTTCTTTGAAACTCAAGATTCAGCTGGAATCTACACAGACACTGAAGACATTATATTTGGCGACTTGACCTCCATTGCTTCACCAATTTTTCATTGTGATCTTAATGCTTAA 927 0.4714 MAAKTSHKTLSVDAPMLKNKKKRPRKTLPRDTPLPRTSPYRGVTRHRWTGRYEAHLWDKTSWNQSQNKKGRQVYLGAYDDEDAAARAYDLAALKYWGSETVLNFPLSNYEEQLKEMEDQSKEEYIGSLRRKSSGFSRGVSKFRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTEEEAAVAYDMAAIEYRGLNAVTNFDLSRYMKCLRPKDQSQPLIQAQHHGPSPTTPSGSESQNATAALGPPPPSPPPSSPSTSNPPPPAPRTFPEDIQTFFETQDSAGIYTDTEDIIFGDLTSIASPIFHCDLNA 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04133 308 MobiDBLite consensus disorder prediction 1 42 - -
Viun5g04133 308 FunFam AP2-like ethylene-responsive transcription factor 140 201 - -
Viun5g04133 308 SUPERFAMILY DNA-binding domain 140 201 IPR016177 GO:0003677
Viun5g04133 308 PRINTS Ethylene responsive element binding protein signature 181 201 IPR001471 GO:0003700|GO:0006355
Viun5g04133 308 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Viun5g04133 308 Gene3D AP2/ERF domain 39 107 IPR036955 GO:0003700|GO:0006355
Viun5g04133 308 Gene3D AP2/ERF domain 140 201 IPR036955 GO:0003700|GO:0006355
Viun5g04133 308 ProSiteProfiles AP2/ERF domain profile. 39 105 IPR001471 GO:0003700|GO:0006355
Viun5g04133 308 SMART rav1_2 141 205 IPR001471 GO:0003700|GO:0006355
Viun5g04133 308 SMART rav1_2 39 111 IPR001471 GO:0003700|GO:0006355
Viun5g04133 308 FunFam AP2-like ethylene-responsive transcription factor 38 107 - -
Viun5g04133 308 MobiDBLite consensus disorder prediction 213 240 - -
Viun5g04133 308 ProSiteProfiles AP2/ERF domain profile. 141 199 IPR001471 GO:0003700|GO:0006355
Viun5g04133 308 MobiDBLite consensus disorder prediction 213 267 - -
Viun5g04133 308 Pfam AP2 domain 40 97 IPR001471 GO:0003700|GO:0006355
Viun5g04133 308 Pfam AP2 domain 140 191 IPR001471 GO:0003700|GO:0006355
Viun5g04133 308 Coils Coil 106 126 - -
Viun5g04133 308 SUPERFAMILY DNA-binding domain 38 107 IPR016177 GO:0003677
Viun5g04133 308 CDD AP2 140 201 IPR001471 GO:0003700|GO:0006355
Viun5g04133 308 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 22 250 - -
Viun5g04133 308 MobiDBLite consensus disorder prediction 241 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04133 Viun-Chr5 48454323 48458077 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04133 36 203 AP2-EREBP Transcription Factor Family AT5G57390 72.024 1.23e-87 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Viun5g04133 AP2 2.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04133 K09285 - gmx:100807781 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g04133 5 48454323 48458077 Viun5g04133 5 48454323 48458077 ECH