Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04132 ATGGCTGCCAAAACCTCACACAAAACCCTCAGCGTCGACGCTCCCATGCTCAAGAACAAGAAGAAGCGCCCACGCAAAACCCTTCCAAGAGACACTCCCTTGCCACGAACCTCTCCTTACAGGGGTGTTACCAGATGGACAGGTCGATATGAGGCTCATCTCTGGGATAAGACTTCATGGAATCAATCGCAGAACAAGAAAGGAAGACAAGTATATCTGGGGGCATACGACGATGAAGATGCTGCGGCACGTGCTTATGATTTGGCAGCATTGAAGTATTGGGGTTCGGAAACCGTCCTCAATTTCCCTCTATCAAATTATGAAGAGCAGCTTAAGGAGATGGAGGATCAATCTAAAGAAGAGTATATCGGATCCTTAAGAAGAAAAAGTAGCGGTTTCTCTCGGGGAGTCTCAAAATTCAGAGGCGTGGCAAGACACCACCACAATGGAAGATGGGAAGCACGAATTGGCAGAGTCTTCGGCAATAAATATCTATACCTTGGAACTTACGGTACAGAAGAAGAAGCAGCAGTGGCGTACGATATGGCGGCAATAGAATACCGTGGACTTAATGCTGTTACCAACTTTGACCTCAGTCGTTATATGAAATGCCTACGTCCAAAAGACCAATCTCAACCTCTAATTCAAGCCCAACATCACGGCCCAAGCCCAACCACACCATCTGGATCTGAATCTCAAAATGCCACCGCAGCATTGGGCCCTCCACCGCCGTCGCCGCCACCTTCTTCACCCTCCACCTCAAATCCTCCTCCTCCTGCTCCTCGCACATTCCCCGAAGATATTCAAACTTTCTTTGAAACTCAAGATTCAGCTGGAATCTACACAGACACTGAAGACATTATATTTGGCGACTTGACCTCCATTGCTTCACCAATTTTTCATTGTGATCTTAATGCTTAA 921 0.4712 MAAKTSHKTLSVDAPMLKNKKKRPRKTLPRDTPLPRTSPYRGVTRWTGRYEAHLWDKTSWNQSQNKKGRQVYLGAYDDEDAAARAYDLAALKYWGSETVLNFPLSNYEEQLKEMEDQSKEEYIGSLRRKSSGFSRGVSKFRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTEEEAAVAYDMAAIEYRGLNAVTNFDLSRYMKCLRPKDQSQPLIQAQHHGPSPTTPSGSESQNATAALGPPPPSPPPSSPSTSNPPPPAPRTFPEDIQTFFETQDSAGIYTDTEDIIFGDLTSIASPIFHCDLNA 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04132 306 ProSiteProfiles AP2/ERF domain profile. 139 197 IPR001471 GO:0003700|GO:0006355
Viun5g04132 306 SMART rav1_2 139 203 IPR001471 GO:0003700|GO:0006355
Viun5g04132 306 SMART rav1_2 39 109 IPR001471 GO:0003700|GO:0006355
Viun5g04132 306 MobiDBLite consensus disorder prediction 1 42 - -
Viun5g04132 306 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 22 248 - -
Viun5g04132 306 SUPERFAMILY DNA-binding domain 38 105 IPR016177 GO:0003677
Viun5g04132 306 MobiDBLite consensus disorder prediction 211 238 - -
Viun5g04132 306 MobiDBLite consensus disorder prediction 211 265 - -
Viun5g04132 306 Coils Coil 104 124 - -
Viun5g04132 306 FunFam AP2-like ethylene-responsive transcription factor 38 105 - -
Viun5g04132 306 CDD AP2 138 199 IPR001471 GO:0003700|GO:0006355
Viun5g04132 306 ProSiteProfiles AP2/ERF domain profile. 39 103 IPR001471 GO:0003700|GO:0006355
Viun5g04132 306 MobiDBLite consensus disorder prediction 239 264 - -
Viun5g04132 306 SUPERFAMILY DNA-binding domain 138 199 IPR016177 GO:0003677
Viun5g04132 306 Gene3D AP2/ERF domain 138 199 IPR036955 GO:0003700|GO:0006355
Viun5g04132 306 Gene3D AP2/ERF domain 39 105 IPR036955 GO:0003700|GO:0006355
Viun5g04132 306 Pfam AP2 domain 40 95 IPR001471 GO:0003700|GO:0006355
Viun5g04132 306 Pfam AP2 domain 138 189 IPR001471 GO:0003700|GO:0006355
Viun5g04132 306 FunFam AP2-like ethylene-responsive transcription factor 138 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04132 Viun-Chr5 48454323 48458078 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04132 36 201 AP2-EREBP Transcription Factor Family AT5G57390 70.833 8.84e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Viun5g04132 AP2 1.8e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04132 K09285 - gmx:100807781 378.252