Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04128 ATGGTTTTCTTACAAACCTTGTTCCTCCTTTTACTTGTAACATTTGGTCACTCCTTGCACCACCACCTCCACCCTTCTCATTCTTTACTCACTGATAAAGCTGCGCTTCTGGAATTCAGAAAAACAATCGTATCAGACCCATTTTCCTCACTTGCAAACTGGGTTGAAGCTGTTCCTGTGTGCAACTTCACAGGTGTTGAATGTGACAGATCCCATAATCGTGTTATACGACTAATCCTATATGATAAAGCTCTTGTGGGGCTCCTTTCACCTGTTCTTTCTAATCTCACTGGACTGCACAACCTTGAGATAGTTCGAAGTCACCTATTTGGTATTATTCCCCGTGAATTTTCCAACCTCAGACGCATTCACAGCATCATCATTGAGGGCAATAATTTGCATGGCTCAATACCAGACTCCTTTTCCATGCTTTCCAAGCTCAACATTCTGGTCATTAAGGAAAATAACATATCAGGTTCGCTTCCTTCATCTCTCTTTTCCAACTGCACTCTGCTAAATGTTGTGGACTTCTCCAGCAACTCGTTGAGTGGTCAAATCCCGGAAGAGATTGGAAACTGCAAAATCCTGTGGAGTATCAGTTTATACAATAATCAATTCACTGGGCAGCTTCCACTCTCGCTCACCAATCTATCGCTTCAGCATTTAGATGTGGAGTACAATTATCTATCTGGCGAATTACCTGCTAAGTTTGTTAGCAACTGGCCTTATCTCCTTTACCTTCATTTATCATACAACAACATGGTAAGCCATGATAGCAACACCAATCTTGATCCATTTTTCACTGCTCTCAGAAACAACAGTAATCTAGAGGAGCTTGAATTGGCGGGGATGGGCCTTGGAGGAAGGTTCACCGATACTCTCCCCAGCCAACTCAACAACCTAAGAACCCTGCTATTGCAGGAAAACCAAATTTTTGGATCAATCCCTCGTGGCTTAGCCAGCCTTTCAAGGCTTTTCATTCTAAATTTAACATCCAATCTTCTGAATGGAACTGTATCTTCAGATATATTCAGATTGCCGAGGTTGGAACAACTTTTCTTGTCACACAACCATTTCAAAATTCCAATTCCAGAAGCAATAGGCGAGTGTCTCAATCTGGGTCTATTGGATCTGTCACATAACCAATTCTCAGGTAGGATTCCAGACAGTTTGGGAGATTTGGTTAGACTAAATTCATTGTTTCTCAACAATAACCTTCTCTCAGGAACAATACCTCCCACATTGGGACGGTGCAGTAATCTGTATAGGCTTGATTTATCCCACAATAGATTAACAGGAAGCATCCCACTGAAATTGGCAGGCTTGCGTGAGATCAGAATTTTCATAAATGTTTCTCATAACCACCTTGAAGGTGACCTGCCAATTGAGCTCAGCAAATTAGAGAAGGTTCAGGAGATAGATCTTTCGTCGAACTACCTCACTGGAAGTATCTTCCCTCAGATATCAGGATGCATTGCTGTTTCAATGATTAACTTTTCAAACAACTTTCTTCAAGGGGAGATCCCTCAGTCCCTGGGTGATCTGAGGAACCTTGAATCTTTTGATGTTTCACGAAATCAATTATCTGGATTGATACCAGCAAAACTTGGGAATCCAAAACTCTGTGGGACGATTGAAGGCATATCTTTGTGCTCTCAAAGGAGAAGATGGATTCATGGTCGTTTGTTATTGACTATATTGATTTTGGTGATCTTGGTATCAACCTTGTTGTCAATAATTTGCTGTGTAATTGGATGCAAGCATCTTAAAGCAATCATCAGCTCTCAGAGGACTGAGGCAAGCAAAAATGCAGGTAGAGCAGAGTTGATTAGTAACTTCCCAAGAATCACGTACAAGGAACTATCAGATGCCACTGGAGGATTTGACAATCAGAGACTCGTTGGATCAGGTAGTTATGGACATGTCTATAGAGGTGTTCTCGCGGATGGGACACCAATAGCAGTAAAGGTGCTGCATTTGCAATCTGGAAACTCTACCAAGAGCTTCAACAGAGAATGCCAAGTTCTGAAGAGAATTAGACACAGGAATCTTATAAGGATTATCACAGCATGTAGCCTACCAGATTTTAAGGCTCTTGTTCTACCTTATATGGCCAATGGCAGCTTGGAGAGTCGCCTCTATCCTTCTTCTGGATCATCAGAATTGAGTATTGTCCAGAGGGTGAATATTTGCAGTGACATAGCTGAAGGGATGGCCTATTTGCATCATCATTCTCCTGTCAGAGTCATACACTGTGATCTAAAACCAAGCAATTGTCTCCTCAATGATGACATGACAGCTCTTGTCTCTGATTTTGGGGTTGCAAGGCTGCTTATGAGTGCTGGAGTTGGGGCTACTGATAACATGTGCAACTCCAGTGCAAATTTGCTTTTTGGATCTATTGGATACATTGCACCAGAATATGGATTTGGTTCCAATTCATCTGTCAAGGGAGATGTCTATAGCTTTGGCATTCTAGTTCTTGAGATGGTGACTAGAAGAAGACCAATAGATGAGTTGTTTGTTGGTGGGTTAAGTCTGCAGAAATGGGTGAAGGTTCATTTTCATGGAAGGGTGGAAAAAGTGGTAGATCCTGCTTTGGTGAGAGCCTCAAGAGATGAATCCCAAGAGGTTAGAAAGATGTGGGAAGTTGCTATTTCGGAGTTAATCGAGTTGGGACTTCTCTGCACACAAGAGTCACCTTCGACAAGACCAACCATGCTTGATGCAGCAGATGACTTAGATCGTCTCAAGAGATACCTTAATGGGGACACAGCAGCAACTTTTGCCTCTTCTCTAGGAATTTCATCTTCCACAATAGCTGGTGACTGCTGA 2835 0.4215 MVFLQTLFLLLLVTFGHSLHHHLHPSHSLLTDKAALLEFRKTIVSDPFSSLANWVEAVPVCNFTGVECDRSHNRVIRLILYDKALVGLLSPVLSNLTGLHNLEIVRSHLFGIIPREFSNLRRIHSIIIEGNNLHGSIPDSFSMLSKLNILVIKENNISGSLPSSLFSNCTLLNVVDFSSNSLSGQIPEEIGNCKILWSISLYNNQFTGQLPLSLTNLSLQHLDVEYNYLSGELPAKFVSNWPYLLYLHLSYNNMVSHDSNTNLDPFFTALRNNSNLEELELAGMGLGGRFTDTLPSQLNNLRTLLLQENQIFGSIPRGLASLSRLFILNLTSNLLNGTVSSDIFRLPRLEQLFLSHNHFKIPIPEAIGECLNLGLLDLSHNQFSGRIPDSLGDLVRLNSLFLNNNLLSGTIPPTLGRCSNLYRLDLSHNRLTGSIPLKLAGLREIRIFINVSHNHLEGDLPIELSKLEKVQEIDLSSNYLTGSIFPQISGCIAVSMINFSNNFLQGEIPQSLGDLRNLESFDVSRNQLSGLIPAKLGNPKLCGTIEGISLCSQRRRWIHGRLLLTILILVILVSTLLSIICCVIGCKHLKAIISSQRTEASKNAGRAELISNFPRITYKELSDATGGFDNQRLVGSGSYGHVYRGVLADGTPIAVKVLHLQSGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLESRLYPSSGSSELSIVQRVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNCLLNDDMTALVSDFGVARLLMSAGVGATDNMCNSSANLLFGSIGYIAPEYGFGSNSSVKGDVYSFGILVLEMVTRRRPIDELFVGGLSLQKWVKVHFHGRVEKVVDPALVRASRDESQEVRKMWEVAISELIELGLLCTQESPSTRPTMLDAADDLDRLKRYLNGDTAATFASSLGISSSTIAGDC 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04128 944 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 166 915 - -
Viun5g04128 944 SUPERFAMILY Protein kinase-like (PK-like) 608 914 IPR011009 -
Viun5g04128 944 Gene3D Ribonuclease Inhibitor 31 146 IPR032675 -
Viun5g04128 944 Gene3D Ribonuclease Inhibitor 147 218 IPR032675 -
Viun5g04128 944 ProSitePatterns Protein kinases ATP-binding region signature. 634 656 IPR017441 GO:0005524
Viun5g04128 944 Gene3D Transferase(Phosphotransferase) domain 1 704 930 - -
Viun5g04128 944 FunFam Leucine-rich repeat receptor-like protein kinase 30 188 - -
Viun5g04128 944 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672|GO:0006468
Viun5g04128 944 SMART serkin_6 628 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g04128 944 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 340 435 - -
Viun5g04128 944 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 608 703 - -
Viun5g04128 944 SUPERFAMILY L domain-like 30 335 - -
Viun5g04128 944 ProSiteProfiles Protein kinase domain profile. 628 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g04128 944 SUPERFAMILY L domain-like 295 539 - -
Viun5g04128 944 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Viun5g04128 944 Gene3D Phosphorylase Kinase; domain 1 609 703 - -
Viun5g04128 944 FunFam Leucine-rich repeat receptor protein kinase EMS1 447 535 - -
Viun5g04128 944 ProSiteProfiles Leucine-rich repeat profile. 420 443 IPR001611 GO:0005515
Viun5g04128 944 Pfam Protein kinase domain 629 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g04128 944 Gene3D Ribonuclease Inhibitor 219 552 IPR032675 -
Viun5g04128 944 CDD STKc_IRAK 634 917 - -
Viun5g04128 944 SMART LRR_typ_2 298 322 IPR003591 -
Viun5g04128 944 SMART LRR_typ_2 346 370 IPR003591 -
Viun5g04128 944 SMART LRR_typ_2 144 168 IPR003591 -
Viun5g04128 944 SMART LRR_typ_2 515 539 IPR003591 -
Viun5g04128 944 SMART LRR_typ_2 394 418 IPR003591 -
Viun5g04128 944 Pfam Leucine rich repeat 300 359 IPR001611 GO:0005515
Viun5g04128 944 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 704 927 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04128 Viun-Chr5 48436210 48439722 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04128 31 904 Receptor kinase-like Gene Family AT3G47570 33.780 2.76e-150 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Viun5g04128 Pkinase 5.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04128 - - pvu:PHAVU_005G183300g 1640.55