Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04127 ATGGTTTTCTTACAAACCTTGTTCCTCCTTTTACTTGTAACATTTGGTCACTCCTTGCACCACCACCTCCACCCTTCTCATTCTTTACTCACTGATAAAGCTGCGCTTCTGGAATTCAGAAAAACAATCGTATCAGACCCATTTTCCTCACTTGCAAACTGGGTTGAAGCTGTTCCTGTGTGCAACTTCACAGGTGTTGAATGTGACAGATCCCATAATCGTGTTATACGACTAATCCTATATGATAAAGCTCTTGTGGGGCTCCTTTCACCTGTTCTTTCTAATCTCACTGGACTGCACAACCTTGAGATAGTTCGAAGTCACCTATTTGGTATTATTCCCCGTGAATTTTCCAACCTCAGACGCATTCACAGCATCATCATTGAGGGCAATAATTTGCATGGCTCAATACCAGACTCCTTTTCCATGCTTTCCAAGCTCAACATTCTGGTCATTAAGGAAAATAACATATCAGGTTCGCTTCCTTCATCTCTCTTTTCCAACTGCACTCTGCTAAATGTTGTGGACTTCTCCAGCAACTCGTTGAGTGGTCAAATCCCGGAAGAGATTGGAAACTGCAAAATCCTGTGGAGTATCAGTTTATACAATAATCAATTCACTGGGCAGCTTCCACTCTCGCTCACCAATCTATCGCTTCAGCATTTAGATGTGGAGTACAATTATCTATCTGGCGAATTACCTGCTAAGTTTGTTAGCAACTGGCCTTATCTCCTTTACCTTCATTTATCATACAACAACATGGTAAGCCATGATAGCAACACCAATCTTGATCCATTTTTCACTGCTCTCAGAAACAACAGTAATCTAGAGGAGCTTGAATTGGCGGGGATGGGCCTTGGAGGAAGGTTCACCGATACTCTCCCCAGCCAACTCAACAACCTAAGAACCCTGCTATTGCAGGAAAACCAAATTTTTGGATCAATCCCTCGTGGCTTAGCCAGCCTTTCAAGGCTTTTCATTCTAAATTTAACATCCAATCTTCTGAATGGAACTGTATCTTCAGATATATTCAGATTGCCGAGGTTGGAACAACTTTTCTTGTCACACAACCATTTCAAAATTCCAATTCCAGAAGCAATAGGCGAGTGTCTCAATCTGGGTCTATTGGATCTGTCACATAACCAATTCTCAGGTAGGATTCCAGACAGTTTGGGAGATTTGGTTAGACTAAATTCATTGTTTCTCAACAATAACCTTCTCTCAGGAACAATACCTCCCACATTGGGACGGTGCAGTAATCTGTATAGGCTTGATTTATCCCACAATAGATTAACAGGAAGCATCCCACTGAAATTGGCAGGCTTGCGTGAGATCAGAATTTTCATAAATGTTTCTCATAACCACCTTGAAGGTGACCTGCCAATTGAGCTCAGCAAATTAGAGAAGGTTCAGGAGATAGATCTTTCGTCGAACTACCTCACTGGAAGTATCTTCCCTCAGATATCAGGATGCATTGCTGTTTCAATGATTAACTTTTCAAACAACTTTCTTCAAGGGGAGATCCCTCAGTCCCTGGGTGATCTGAGGAACCTTGAATCTTTTGATGTTTCACGAAATCAATTATCTGGATTGATACCAGCAAAACTTGGTAAAATTGAAACGCTCACTTTTCTCAATTTATCATTTAACAATCTGCAAGGAAAGATTCCATCTGGTGGTATCTTTAATTCAGTTTCAAACTTGTCATTCTTAGGGAATCCAAAACTCTGTGGGACGATTGAAGGCATATCTTTGTGCTCTCAAAGGAGAAGATGGATTCATGGTCGTTTGTTATTGACTATATTGATTTTGGTGATCTTGGTATCAACCTTGTTGTCAATAATTTGCTGTGTAATTGGATGCAAGCATCTTAAAGCAATCATCAGCTCTCAGAGGACTGAGGCAAGCAAAAATGCAGGTAGAGCAGAGTTGATTAGTAACTTCCCAAGAATCACGTACAAGGAACTATCAGATGCCACTGGAGGATTTGACAATCAGAGACTCGTTGGATCAGGTAGTTATGGACATGTCTATAGAGGTGTTCTCGCGGATGGGACACCAATAGCAGTAAAGGTGCTGCATTTGCAATCTGGAAACTCTACCAAGAGCTTCAACAGAGAATGCCAAGTTCTGAAGAGAATTAGACACAGGAATCTTATAAGGATTATCACAGCATGTAGCCTACCAGATTTTAAGGCTCTTGTTCTACCTTATATGGCCAATGGCAGCTTGGAGAGTCGCCTCTATCCTTCTTCTGGATCATCAGAATTGAGTATTGTCCAGAGGGTGAATATTTGCAGTGACATAGCTGAAGGGATGGCCTATTTGCATCATCATTCTCCTGTCAGAGTCATACACTGTGATCTAAAACCAAGCAATTGTCTCCTCAATGATGACATGACAGCTCTTGTCTCTGATTTTGGGGTTGCAAGGCTGCTTATGAGTGCTGGAGTTGGGGCTACTGATAACATGTGCAACTCCAGTGCAAATTTGCTTTTTGGATCTATTGGATACATTGCACCAGAATATGGATTTGGTTCCAATTCATCTGTCAAGGGAGATGTCTATAGCTTTGGCATTCTAGTTCTTGAGATGGTGACTAGAAGAAGACCAATAGATGAGTTGTTTGTTGGTGGGTTAAGTCTGCAGAAATGGGTGAAGGTTCATTTTCATGGAAGGGTGGAAAAAGTGGTAGATCCTGCTTTGGTGAGAGCCTCAAGAGATGAATCCCAAGAGGTTAGAAAGATGTGGGAAGTTGCTATTTCGGAGTTAATCGAGTTGGGACTTCTCTGCACACAAGAGTCACCTTCGACAAGACCAACCATGCTTGATGCAGCAGATGACTTAGATCGTCTCAAGAGATACCTTAATGGGGACACAGCAGCAACTTTTGCCTCTTCTCTAGGAATTTCATCTTCCACAATAGCTGGTGACTGCTGA 2940 0.4177 MVFLQTLFLLLLVTFGHSLHHHLHPSHSLLTDKAALLEFRKTIVSDPFSSLANWVEAVPVCNFTGVECDRSHNRVIRLILYDKALVGLLSPVLSNLTGLHNLEIVRSHLFGIIPREFSNLRRIHSIIIEGNNLHGSIPDSFSMLSKLNILVIKENNISGSLPSSLFSNCTLLNVVDFSSNSLSGQIPEEIGNCKILWSISLYNNQFTGQLPLSLTNLSLQHLDVEYNYLSGELPAKFVSNWPYLLYLHLSYNNMVSHDSNTNLDPFFTALRNNSNLEELELAGMGLGGRFTDTLPSQLNNLRTLLLQENQIFGSIPRGLASLSRLFILNLTSNLLNGTVSSDIFRLPRLEQLFLSHNHFKIPIPEAIGECLNLGLLDLSHNQFSGRIPDSLGDLVRLNSLFLNNNLLSGTIPPTLGRCSNLYRLDLSHNRLTGSIPLKLAGLREIRIFINVSHNHLEGDLPIELSKLEKVQEIDLSSNYLTGSIFPQISGCIAVSMINFSNNFLQGEIPQSLGDLRNLESFDVSRNQLSGLIPAKLGKIETLTFLNLSFNNLQGKIPSGGIFNSVSNLSFLGNPKLCGTIEGISLCSQRRRWIHGRLLLTILILVILVSTLLSIICCVIGCKHLKAIISSQRTEASKNAGRAELISNFPRITYKELSDATGGFDNQRLVGSGSYGHVYRGVLADGTPIAVKVLHLQSGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLESRLYPSSGSSELSIVQRVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNCLLNDDMTALVSDFGVARLLMSAGVGATDNMCNSSANLLFGSIGYIAPEYGFGSNSSVKGDVYSFGILVLEMVTRRRPIDELFVGGLSLQKWVKVHFHGRVEKVVDPALVRASRDESQEVRKMWEVAISELIELGLLCTQESPSTRPTMLDAADDLDRLKRYLNGDTAATFASSLGISSSTIAGDC 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04127 979 Gene3D Phosphorylase Kinase; domain 1 644 738 - -
Viun5g04127 979 Gene3D Transferase(Phosphotransferase) domain 1 739 965 - -
Viun5g04127 979 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Viun5g04127 979 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 259 461 - -
Viun5g04127 979 Pfam Protein kinase domain 664 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g04127 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Viun5g04127 979 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 739 962 - -
Viun5g04127 979 Gene3D Ribonuclease Inhibitor 145 218 IPR032675 -
Viun5g04127 979 Gene3D Ribonuclease Inhibitor 31 144 IPR032675 -
Viun5g04127 979 Gene3D Ribonuclease Inhibitor 219 591 IPR032675 -
Viun5g04127 979 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 269 950 - -
Viun5g04127 979 SMART LRR_typ_2 298 322 IPR003591 -
Viun5g04127 979 SMART LRR_typ_2 346 370 IPR003591 -
Viun5g04127 979 SMART LRR_typ_2 515 538 IPR003591 -
Viun5g04127 979 SMART LRR_typ_2 144 168 IPR003591 -
Viun5g04127 979 SMART LRR_typ_2 394 418 IPR003591 -
Viun5g04127 979 ProSitePatterns Protein kinases ATP-binding region signature. 669 691 IPR017441 GO:0005524
Viun5g04127 979 ProSiteProfiles Leucine-rich repeat profile. 420 443 IPR001611 GO:0005515
Viun5g04127 979 SUPERFAMILY L domain-like 299 578 - -
Viun5g04127 979 SUPERFAMILY RNI-like 74 360 - -
Viun5g04127 979 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 643 738 - -
Viun5g04127 979 ProSiteProfiles Protein kinase domain profile. 663 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g04127 979 SMART serkin_6 663 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g04127 979 FunFam Leucine-rich repeat receptor-like protein kinase 30 188 - -
Viun5g04127 979 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 462 586 - -
Viun5g04127 979 Pfam Leucine rich repeat 300 359 IPR001611 GO:0005515
Viun5g04127 979 CDD STKc_IRAK 669 952 - -
Viun5g04127 979 SUPERFAMILY Protein kinase-like (PK-like) 643 949 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04127 Viun-Chr5 48436210 48439723 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04127 31 939 Receptor kinase-like Gene Family AT3G47570 35.082 1.85e-164 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Viun5g04127 Pkinase 5.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04127 - - gmx:100815766 1624.76