Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04110 ATGTCCCACCATCCATTTGTTAATATGCCTACCCTACCACTGCACTTCTTCACTCACTCCTTTTTCCTTTCTCATTCTGCAATCAACTCAACCAACCACTATATATACACATGCCTCTCATCTCTTCTCTTCTCACCACACACAAACATTTCTCATCTCTCTTTGTGGGGTATGGACAACAATGACGAAATCCCTTCAACACCTGCCACCCCAGGAACTCCTGGTGCACCTCTTTTTGGAGGTTTCACCAATAGGACTAATAATGGTAATAACAAGAAATCGCTTCTCAAGAGTTGTAGATGCTTCACTGTGGAGGATTGGACCATAGAAGATGGAGCATTACCACCCGTCTCCTGCTCTTTGCCACCGCCTCCTACTGTCCCTCTAGCAAGAAAGGTCGGTGCTGAGTTCATCGGCACCTTCATTCTCATGTTCGCCGCCACTGCCGCCGCCATTGTCAACCAGAAGACTAACGGCTCCGAGACCCTCATAGGCTGCGCTGCCACCACCGGTCTCGCCGTTATGATCGTCATCCTCGCCACCGGCCACATCTCCGGTGCTCATCTCAACCCTGCTGTCACCCTTTCCTTCGCTGCATTGAAGCACTTCCCCTGGAAGCATGTGCCTATGTATATTGGTGCACAAGTTTTGGCATCGATTTGTGCCGCATTTGCTCTGAAAGGGGTTTATCACCCTTTCATGAGTGGTGGAGTCACCGTTCCTTCCGGGGGATATGGCCAATCTTTTGCTTTGGAGTTCATTATTGCCTTCAATCTCATGTTCGTTGTCACTGCAGTCGCCACCGACACCAGAGCTGTGGGAGAACTCGCGGGAATCGCGGTGGGAGCTACTGTGATGCTCAACATACTGATAGCAGGGCCAGTATCAGGAGGCTCAATGAACCCAGTAAGAACACTAGGTCCTGCCATCGCCGCAAACAACTACAAAGCCATATGGGTTTATCTGGTAGCTCCCGTACTTGGAGCTTTAGCCGGTGCAGGTACCTACACTGCAGTGAAGCTGCCCGAAGAAGACGATGACGCCAAAGCAAAGGCTTCAATCAGCTTCAGAAGGTGA 1077 0.5042 MSHHPFVNMPTLPLHFFTHSFFLSHSAINSTNHYIYTCLSSLLFSPHTNISHLSLWGMDNNDEIPSTPATPGTPGAPLFGGFTNRTNNGNNKKSLLKSCRCFTVEDWTIEDGALPPVSCSLPPPPTVPLARKVGAEFIGTFILMFAATAAAIVNQKTNGSETLIGCAATTGLAVMIVILATGHISGAHLNPAVTLSFAALKHFPWKHVPMYIGAQVLASICAAFALKGVYHPFMSGGVTVPSGGYGQSFALEFIIAFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPVSGGSMNPVRTLGPAIAANNYKAIWVYLVAPVLGALAGAGTYTAVKLPEEDDDAKAKASISFRR 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04110 358 Gene3D Glycerol uptake facilitator protein. 125 350 IPR023271 -
Viun5g04110 358 PRINTS Major intrinsic protein family signature 170 194 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g04110 358 PRINTS Major intrinsic protein family signature 282 304 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g04110 358 PRINTS Major intrinsic protein family signature 251 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g04110 358 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g04110 358 PRINTS Major intrinsic protein family signature 207 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g04110 358 PRINTS Major intrinsic protein family signature 319 339 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g04110 358 PANTHER AQUAPORIN NIP2-1 93 344 IPR034294 -
Viun5g04110 358 SUPERFAMILY Aquaporin-like 128 345 IPR023271 -
Viun5g04110 358 CDD MIP 131 336 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g04110 358 ProSitePatterns MIP family signature. 188 196 IPR022357 -
Viun5g04110 358 Pfam Major intrinsic protein 127 336 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun5g04110 358 FunFam Aquaporin NIP2-1 119 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04110 Viun-Chr5 48358939 48362647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04110 60 358 Major Intrinsic Protein MIP AT1G80760 75.244 4.60e-163 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04110 K09874 - gmx:100815637 485.723