Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04108 ATGTCTGGTGAAGAGGTAGCTGTTGCAGCAGAGGCACCTGCTTCCATTCCCGGGGAGCCCATGGACATCATGACTGCTTTACAGCTTGTGCTGAGAAAATCTCTGGCTTACGGTGGTCTTGCAAGAGGTCTTCATGAAAGTGCCAAGATCATTGAGAAGCATGCTGCACAGCTCTGCGTTTTAGCAGAAGATTGTGACCAACCTGATTATGTGAAACTGGTGAAGGCCCTTTGCGCCGAGCACAATGTTAGCCTTTTGACAGTTCCAAGTGCTAAGACCCTTGGGGAATGGGCTGGTTTGTGTAAGATTGATTCAGAGGGAAAGGTAACTGGTTGCTCATGTGTGGTTGTTAAGGATTTTGGGGAGGAACATGAAGCCTATAATGTTGTTCTGCAGCACGTGAAAGCTAACTAA 414 0.4758 MSGEEVAVAAEAPASIPGEPMDIMTALQLVLRKSLAYGGLARGLHESAKIIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKVTGCSCVVVKDFGEEHEAYNVVLQHVKAN 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04108 137 PRINTS Ribosomal protein S12E family signature 30 43 IPR000530 GO:0003735|GO:0005840|GO:0006412
Viun5g04108 137 PRINTS Ribosomal protein S12E family signature 44 60 IPR000530 GO:0003735|GO:0005840|GO:0006412
Viun5g04108 137 PRINTS Ribosomal protein S12E family signature 85 106 IPR000530 GO:0003735|GO:0005840|GO:0006412
Viun5g04108 137 PANTHER 40S RIBOSOMAL PROTEIN S12 16 136 - -
Viun5g04108 137 FunFam 40S ribosomal protein S12 7 137 - -
Viun5g04108 137 ProSitePatterns Ribosomal protein S12e signature. 26 44 IPR000530 GO:0003735|GO:0005840|GO:0006412
Viun5g04108 137 Gene3D - 5 137 IPR029064 -
Viun5g04108 137 SUPERFAMILY L30e-like 20 135 IPR029064 -
Viun5g04108 137 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 26 110 IPR004038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04108 Viun-Chr5 48346624 48348505 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04108 16 137 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 73.600 7.55e-64 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04108 K02951 - gmx:100500093 259.61