Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04105 ATGGATTATTCATCAAGGATTAACACTTCATTGGATCTCAATATCAATCCTCGCAGGCTGCATGAAGAATTTCCCAAAAAGGAGGTGGAACACAATTTTTTCTCTTTGGGCGTGAAGAAATCTTCTGTAAAAGAACAGTCTTCGGGTGCCTTGGTGGAGGAGCTGAAGCGGGTGAGTGCAGAAAACAAGAAGCTGACCGAAATGCTGACGGAGATGTGTGAGAACTACAACGCTTTACGAAGCAATTTGATGGAGTATATGAGGAAGAATCCCGATAAGGAGCAAAGTTCATCGAAGAAAAGGAAGTCTGAAAGCAGCTTCAACAACAACAGTGCTCCGAAGAGCATCAACGGAAACTCCGAGAGCAGTTCAACCGACGAAGAATCATGCAAGAAACCAAAGGAAGACATCAAGACACCAGTTTCAAAAGTTTACGTGAGGACAGAAGCATCTGACACAAGCCTGATCGTGAAAGATGGATATCAGTGGAGGAAATACGGACAAAAGGTGACCAGAGATAACCCTTCTCCACGAGCTTACTTCAAGTGCTCTTTTGCTCCGAGTTGCCCAGTCAAAAAGAAGGTGCAGAGAAGTGTGGATGATCAATCTGTTCTTGTTGCAACATATGAAGGAGAGCACAATCATCCTCATCCTTCTCAAATGGAGCCAGCAACAGGCTCAAACCGTGGTGTGAACCCTGGTTCAGTACCATGTTCAGGGTCTCTCAGTTCTTCCGCACCAACAGTTACTCTTGACTGGACAAAATCTAAGTCCAGCAGCGATTCGAAGAATATAAGTCCCAAAACGGAAGCACCAGAAGTTCCTCAGATTTTGGTAGAACAGATGGCCACTTCCTTGACCAAGGATCCAAATTTCAGAGCAGCACTAGTTGCTGCAATCTCGGGAAAAATGTTGCACAATAATTGA 927 0.4455 MDYSSRINTSLDLNINPRRLHEEFPKKEVEHNFFSLGVKKSSVKEQSSGALVEELKRVSAENKKLTEMLTEMCENYNALRSNLMEYMRKNPDKEQSSSKKRKSESSFNNNSAPKSINGNSESSSTDEESCKKPKEDIKTPVSKVYVRTEASDTSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPHPSQMEPATGSNRGVNPGSVPCSGSLSSSAPTVTLDWTKSKSSSDSKNISPKTEAPEVPQILVEQMATSLTKDPNFRAALVAAISGKMLHNN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04105 308 FunFam WRKY transcription factor 40 142 219 - -
Viun5g04105 308 MobiDBLite consensus disorder prediction 102 124 - -
Viun5g04105 308 Coils Coil 55 89 - -
Viun5g04105 308 MobiDBLite consensus disorder prediction 90 136 - -
Viun5g04105 308 Gene3D WRKY domain 141 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g04105 308 SMART WRKY_cls 157 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g04105 308 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 28 304 IPR044810 GO:0003700
Viun5g04105 308 MobiDBLite consensus disorder prediction 210 272 - -
Viun5g04105 308 Pfam WRKY DNA -binding domain 158 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g04105 308 SUPERFAMILY WRKY DNA-binding domain 154 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g04105 308 ProSiteProfiles WRKY domain profile. 152 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g04105 308 MobiDBLite consensus disorder prediction 220 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04105 Viun-Chr5 48312814 48314718 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04105 4 308 WRKY Transcription Factor Family AT1G80840 52.830 1.52e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun5g04105 WRKY 2.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04105 - - gmx:732588 504.212