Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04104 ATGATCGTGTGTGTGGTGCCATTTCAGTCTTCGGGTGCCTTGGTGGAGGAGCTGAAGCGGGTGAGTGCAGAAAACAAGAAGCTGACCGAAATGCTGACGGAGATGTGTGAGAACTACAACGCTTTACGAAGCAATTTGATGGAGTATATGAGGAAGAATCCCGATAAGGAGCAAAGTTCATCGAAGAAAAGGAAGTCTGAAAGCAGCTTCAACAACAACAGTGCTCCGAAGAGCATCAACGGAAACTCCGAGAGCAGTTCAACCGACGAAGAATCATGCAAGAAACCAAAGGAAGACATCAAGACACCAGTTTCAAAAGTTTACGTGAGGACAGAAGCATCTGACACAAGCCTGATCGTGAAAGATGGATATCAGTGGAGGAAATACGGACAAAAGGTGACCAGAGATAACCCTTCTCCACGAGCTTACTTCAAGTGCTCTTTTGCTCCGAGTTGCCCAGTCAAAAAGAAGGTGCAGAGAAGTGTGGATGATCAATCTGTTCTTGTTGCAACATATGAAGGAGAGCACAATCATCCTCATCCTTCTCAAATGGAGCCAGCAACAGGCTCAAACCGTGGTGTGAACCCTGGTTCAGTACCATGTTCAGGGTCTCTCAGTTCTTCCGCACCAACAGTTACTCTTGACTGGACAAAATCTAAGTCCAGCAGCGATTCGAAGAATATAAGTCCCAAAACGGAAGCACCAGAAGTTCCTCAGATTTTGGTAGAACAGATGGCCACTTCCTTGACCAAGGATCCAAATTTCAGAGCAGCACTAGTTGCTGCAATCTCGGGAAAAATGTTGCACAATAATTGA 816 0.4583 MIVCVVPFQSSGALVEELKRVSAENKKLTEMLTEMCENYNALRSNLMEYMRKNPDKEQSSSKKRKSESSFNNNSAPKSINGNSESSSTDEESCKKPKEDIKTPVSKVYVRTEASDTSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPHPSQMEPATGSNRGVNPGSVPCSGSLSSSAPTVTLDWTKSKSSSDSKNISPKTEAPEVPQILVEQMATSLTKDPNFRAALVAAISGKMLHNN 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04104 271 MobiDBLite consensus disorder prediction 183 232 - -
Viun5g04104 271 MobiDBLite consensus disorder prediction 53 99 - -
Viun5g04104 271 ProSiteProfiles WRKY domain profile. 115 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g04104 271 SMART WRKY_cls 120 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g04104 271 SUPERFAMILY WRKY DNA-binding domain 116 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g04104 271 Gene3D WRKY domain 104 182 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g04104 271 Coils Coil 18 52 - -
Viun5g04104 271 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 13 267 IPR044810 GO:0003700
Viun5g04104 271 MobiDBLite consensus disorder prediction 173 235 - -
Viun5g04104 271 Pfam WRKY DNA -binding domain 121 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g04104 271 MobiDBLite consensus disorder prediction 65 87 - -
Viun5g04104 271 FunFam WRKY transcription factor 40 105 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04104 Viun-Chr5 48312814 48314719 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04104 11 271 WRKY Transcription Factor Family AT1G80840 57.664 3.32e-100 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun5g04104 WRKY 1.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04104 - - gsj:114388658 439.884