Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04101 ATGTGGAGTTCAACTTCAAGCACAGCGATTGCAGCACCCTCCTCCGACGAGGATCCCACCCAATCCTCTTCGTCTTCATTCTCCACTTCTCTCTTCAATTTCTCTTCTGGAAACCCTACAATCGAAGAGACACGCGGCCTCATGCATCTCTTCCCCGACGACGTTCCTGCCACTCTTCCGGTTGGACGCAAACCTCTTGTTTGCGTTGTCGGCGTCCCCAATCACATGACATATGCGGATTTCTGTCAGTTCTGTGGTTCCTTCATTCAGCACATGCTAGAGATGCGCATTGTTAGGATGGACGGTATGGAGGATCAGTACAGTGTCTTGATTCGCTTTGACCACCAAGACTCCACCGACAGCTTCTACAAGCACTACAATGGCCGCCGATTCTCCTCTCTCGAGGTTGAGTTTTGCCGAGTTCTTTTTACGTTAGACGTGCAGTACACTGGTTCCATTGAACATGCGCAGCCCTCAAATGCCAGTTCAACTGAACAGCCAACTTGTCCTGTTTGTCTTGAGCGATTGGATCAGGACACCAGTGGAATTCTTACAACCATATGCAACCATTCTTTCCATTGTTCTTGTATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCGTTTTGTTTTGTCTGTCAAACCACTGAGAACCTGTGGATATGCGTTATATGTGGGTATGTTGGCTGCGGAAGATACAAGGGAGGGCATGCTATAATACACTGGAAAGAGACGCAGCATTGCTATTCCCTAGAAGTGGAAACCAAACGTGTGTGGGATTATGTCGGAGACAACTATGTTCACAGACTTATTCAGTCCAAAACTGATGGGAAATTGGTTGAGCTGAACGCTCACTGTGCACACGCTGACAATGGATGCGGAAGTTGCAGCTGTGAAGACAATGCCATGAGTGAGGCTATACTTAATAGTAAAGTCGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCTACACAACTTGAAAACCAAAAAATTTATTTTGAATCCTTATTACAAGAAGTAAAAGAAGAATCTGAAAGAAAAATTTCCAAAGCTGTTCAGAAGGCTATCAATCTTAAACAACAGAAGATTCAGTCCAAGATTGACAGATGTAAGAAAGAGAAGAAATTTCTGGATGATCTTAATGAGAATCTTGTGAAAAATGAGGACATTTGGAAAGCAAAGATACTTGAGGTTGAAGAGAGGGAGAGAAAAAGTACCAGAATGATGGAGGATAGAGTAGCGGATCTGGAAAAGCAGCTTGGAGATCTCATGGTTTGTCTTGAGGGGGGGAAGATGGTAGAAGAGTTACCCGTTTCAGATGATGAGATTAAAGAAGGGACTGTATTTCAAAAATCAAAGGAATCATCCTCAATTAGTGCTTCTCAGCAGGAAGGAGAGTACACGCATGCATAA 1446 0.4385 MWSSTSSTAIAAPSSDEDPTQSSSSSFSTSLFNFSSGNPTIEETRGLMHLFPDDVPATLPVGRKPLVCVVGVPNHMTYADFCQFCGSFIQHMLEMRIVRMDGMEDQYSVLIRFDHQDSTDSFYKHYNGRRFSSLEVEFCRVLFTLDVQYTGSIEHAQPSNASSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSFCFVCQTTENLWICVICGYVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNAHCAHADNGCGSCSCEDNAMSEAILNSKVEAIVNEYNELLATQLENQKIYFESLLQEVKEESERKISKAVQKAINLKQQKIQSKIDRCKKEKKFLDDLNENLVKNEDIWKAKILEVEERERKSTRMMEDRVADLEKQLGDLMVCLEGGKMVEELPVSDDEIKEGTVFQKSKESSSISASQQEGEYTHA 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04101 481 MobiDBLite consensus disorder prediction 455 481 - -
Viun5g04101 481 MobiDBLite consensus disorder prediction 461 481 - -
Viun5g04101 481 CDD RRM_BRAP2_like 67 148 - -
Viun5g04101 481 ProSiteProfiles Zinc finger RING-type profile. 169 209 IPR001841 -
Viun5g04101 481 CDD RING-H2_BRAP2 167 210 IPR047243 -
Viun5g04101 481 Pfam Zn-finger in ubiquitin-hydrolases and other protein 220 279 IPR001607 GO:0008270
Viun5g04101 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 211 IPR013083 -
Viun5g04101 481 PANTHER BRCA1-ASSOCIATED PROTEIN 8 469 - -
Viun5g04101 481 Coils Coil 378 398 - -
Viun5g04101 481 SMART ring_2 169 208 IPR001841 -
Viun5g04101 481 SUPERFAMILY RING/U-box 185 284 - -
Viun5g04101 481 MobiDBLite consensus disorder prediction 1 24 - -
Viun5g04101 481 SMART Zf_UBP_1 219 268 IPR001607 GO:0008270
Viun5g04101 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 292 IPR013083 -
Viun5g04101 481 Pfam Ring finger domain 168 209 IPR001841 -
Viun5g04101 481 Coils Coil 334 372 - -
Viun5g04101 481 ProSiteProfiles Zinc finger UBP-type profile. 203 296 IPR001607 GO:0008270
Viun5g04101 481 Pfam BRCA1-associated protein 2 60 156 IPR011422 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04101 Viun-Chr5 48297205 48300478 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04101 165 209 C3H Transcription Factor Family AT1G72220 48.936 1.73e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04101 K10632 - gmx:100794688 852.818