Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04100 ATGGAGGAAAACCAGTGGGGGAAGTGCTCTTCTTCCCATATGGAAATGGAGGATGAGGTGTTGAATGAATGTTTGTGCCAGACGAACCCCATTGATGAAGAGTTTTTAAGAGATATTCTGCAGCAGCCGCAAGAGGGTCCAGATCTTAATACTTTTGGTGGTGCTGATAAGTTGATGATGAAGAACACCAATTCATCCATGATGAATCTTTGTGGTGAAAATAAGAACAAGCCAACCACATCTCCGACCACCTATGTTCTGTCTTTTGACAAATCCGCTGATCCTCATCCTCTGTCTGCTTGGAAAGATGTCTCCCACAACTTGCCTTTGTCCTCAGCAAGGACCAACCAGGGAACCAAGAAAACTCGAAGCGCTTCTGAATCAATGGATCACATCATGTCAGAGAGAAAGAGGAGACAGGAACTCACCAGAAAATTCATAGCACTTGCTTCCACTATCCCTGGCTTGAAGAAGATGGACAAGGCACATGTACTAAGAGAAGCAATAAATTACGTGAAGCAACTGCAAGAACGTGTGGAAGTGCTAGAAGAAGATATCCAGAAGAACGGTGCAGAATCAGCGATCACCATAACAAGATCTCATCTCTGCATTGATGACACAAAGAGTGATGAATGGTATGGGTCCAATGAAGCAGTTCCTGCTGAAGTTGAAGCCAGAGTCCTAGGGAAGCAAGTGTTGATCAAAATTCACTGTGGAAAACAAAAGGGTATTCTGCTCAAAATATTGTCTCAGCTTGAGCGTCTTCATCTCTTCATATCCACTAGCAATGTCTTGCCACTTGGAAGTACCATTGACATCACCATCATTGCTCAGATGGGTGATGAATACAAGATGGTAGTGAAGGATCTAGTGAAAGAACTGAGACAAGTGGCTATGATGAAGTCATGTGCGTCACAGTGA 921 0.4365 MEENQWGKCSSSHMEMEDEVLNECLCQTNPIDEEFLRDILQQPQEGPDLNTFGGADKLMMKNTNSSMMNLCGENKNKPTTSPTTYVLSFDKSADPHPLSAWKDVSHNLPLSSARTNQGTKKTRSASESMDHIMSERKRRQELTRKFIALASTIPGLKKMDKAHVLREAINYVKQLQERVEVLEEDIQKNGAESAITITRSHLCIDDTKSDEWYGSNEAVPAEVEARVLGKQVLIKIHCGKQKGILLKILSQLERLHLFISTSNVLPLGSTIDITIIAQMGDEYKMVVKDLVKELRQVAMMKSCASQ 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04100 306 Coils Coil 165 192 - -
Viun5g04100 306 PANTHER BHLH TRANSCRIPTION FACTOR 45 299 - -
Viun5g04100 306 SMART finulus 132 181 IPR011598 GO:0046983
Viun5g04100 306 MobiDBLite consensus disorder prediction 109 123 - -
Viun5g04100 306 Gene3D - 116 191 IPR036638 GO:0046983
Viun5g04100 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 194 IPR036638 GO:0046983
Viun5g04100 306 Pfam Helix-loop-helix DNA-binding domain 131 176 IPR011598 GO:0046983
Viun5g04100 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Viun5g04100 306 MobiDBLite consensus disorder prediction 109 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04100 Viun-Chr5 48295216 48297129 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04100 82 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 41.880 2.85e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun5g04100 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04100 - - vum:124843254 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g04100 5 48295216 48297129 Viun10g02783 10 40742869 40744722 PCT
Viun10g02782 10 40732020 40736911 Viun5g04100 5 48295216 48297129 PCT