Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04099 ATGTTATTTAAATGGGGTATTAGTTTGAAAGTCACTGAGGCACCTGGACTCAACTCTTGCGGAAAATCATCAGAGAACGCACTTTACTCTCCGATGGAGCAAGCATGGCAGAATTGGTCTCATCAAATGGAAATGGACGATGATGATGATAGGCACGAGGATCTGATGTTAGAAGAGTGCCACACAGAAGAGGAGGAGTTCCTGAGAGAGATTCTTGGTGAACCAAGTTTTTGTTCTGAAAGTGAAACTCATCACCACAACTCCACAACAATGGCACCTTCCAAAAGGTCTTCTTCTTCTCCCAGAACATATATTTTGTCTTTCGATAGCTCTACCATTATACCTGCTACCACCCCTCAACCACCGTCTTCTTCCCCTCTCTCCGGCAAAAAACGCCGCCAAAATCTCAACTCAGAACAACCAAAACCCAAGTCCACAACCCAAAAGAGGGGAAGAAACGGTTCCGTGGACCACATCATGGCCGAAAGAAAAAGGAGACAGGAACTCACAGAAAGGTTCATCGCACTTTCAGCCACCATCCCTGGTCTCAAGAAGACGGACAAGAGTTCGATTCTGGGCGAAGCGATTAATTACGTGAAAGAACTTAAAGAACGTGTGACGGAGCTTGAAGAGAGAAACAAGAGAGGGAAAGAATCGGTGATGATCCAGAAGAAGAGTGATGTGTGTGACTCGAGTGAAACAGATTCGAAGGATTGGTGTAGAATGCTCCCTGATATCGAAGCGAGAGTGATGGAGAATGAGGTGCTGATTGAGATTCATTGCGAGAAGGAAGAAGGGGTTGAACTCAAATTATTGGACCACCTTGAAAATCTTCATCTCTGTGTCACCGCCACCAGCGTGTTGCCCTTTGGGAATTCAACTCTTGGCATTACCATTATCGCTCAGATGGGTGACGCATACAAGATGACAGTGAAAGATGTAGTGAAAAATCTGAGGAAAGTGCTGATGAATCACATGAACATCCATGGCGATCCGTACTAG 1002 0.4531 MLFKWGISLKVTEAPGLNSCGKSSENALYSPMEQAWQNWSHQMEMDDDDDRHEDLMLEECHTEEEEFLREILGEPSFCSESETHHHNSTTMAPSKRSSSSPRTYILSFDSSTIIPATTPQPPSSSPLSGKKRRQNLNSEQPKPKSTTQKRGRNGSVDHIMAERKRRQELTERFIALSATIPGLKKTDKSSILGEAINYVKELKERVTELEERNKRGKESVMIQKKSDVCDSSETDSKDWCRMLPDIEARVMENEVLIEIHCEKEEGVELKLLDHLENLHLCVTATSVLPFGNSTLGITIIAQMGDAYKMTVKDVVKNLRKVLMNHMNIHGDPY 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04099 333 SMART finulus 159 208 IPR011598 GO:0046983
Viun5g04099 333 MobiDBLite consensus disorder prediction 82 153 - -
Viun5g04099 333 Coils Coil 192 219 - -
Viun5g04099 333 Gene3D - 144 218 IPR036638 GO:0046983
Viun5g04099 333 MobiDBLite consensus disorder prediction 78 158 - -
Viun5g04099 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 220 IPR036638 GO:0046983
Viun5g04099 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
Viun5g04099 333 PANTHER BHLH TRANSCRIPTION FACTOR 23 325 - -
Viun5g04099 333 Pfam Helix-loop-helix DNA-binding domain 158 202 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04099 Viun-Chr5 48284398 48286542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04099 150 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.027 2.32e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun5g04099 HLH 9.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04099 - - pvu:PHAVU_005G181300g 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g04099 5 48284398 48286542 Viun10g02782 10 40732020 40736911 PCT