Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04092 ATGGAGCTTGTGTGGTCAGAGCCACATCCATCATCTGAAAATGATCTGAACGTTCCATTTTCAGAGAATCCTCCACCTTGCTCAAAGCCAGTGCTACCTTCCATGGATATCCAAAAGGAGAAGAAGGAGGACCAAGAACATCACTATGAGTCAAAGCCTGAACTCAACCTCATCAACTGCATAGATACAAATTTGTGCATGAACTCTTCTTCAGAATCATGTCATGGAGGAGGACACGGTGATGAATTGGAGCCAAGGATATTCTCATGCAACTACTGCCAAAGGAAGTTTTATAGTTCGCAGGCACTTGGGGGACACCAGAATGCGCATAAGCGTGAAAGAACTTTGGCAAAAAGAGGACACAAAGCTGGTGCTGCAGTTCCAATAGATTTTGCACACAGGTATTCTAGCATGGCTTCTCTGCCTCTGCATGGCTCCTATAATAGGTCACTGGGAATTCAGGCACATTCTATGATCAACAAACGCTCTTTTCAAACACAAACACCAGGTTTTTGTCTGTCACATTCTCATGCTCAAAACTGCTCTCAGAAGCGGCCTTTGTACTACTCACAACAAGCAACTGGGGCAGAATCTGAATCACCCTTGGATGGTACCATCCAACGGCTAGGGAAGTTTTGTCCAAGGCTGATGCCAGAGGGATTTGGAAGCTACTGGTTGGATAGTGTTCACCATTTGAAGACTAAACAAGAGGAGTTGCACAAGCTTGACTTGTCCCTTAAACTCTAA 747 0.4485 MELVWSEPHPSSENDLNVPFSENPPPCSKPVLPSMDIQKEKKEDQEHHYESKPELNLINCIDTNLCMNSSSESCHGGGHGDELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHKAGAAVPIDFAHRYSSMASLPLHGSYNRSLGIQAHSMINKRSFQTQTPGFCLSHSHAQNCSQKRPLYYSQQATGAESESPLDGTIQRLGKFCPRLMPEGFGSYWLDSVHHLKTKQEELHKLDLSLKL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04092 248 MobiDBLite consensus disorder prediction 35 50 - -
Viun5g04092 248 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Viun5g04092 248 Gene3D Classic Zinc Finger 69 130 - -
Viun5g04092 248 MobiDBLite consensus disorder prediction 1 50 - -
Viun5g04092 248 SUPERFAMILY beta-beta-alpha zinc fingers 85 115 IPR036236 -
Viun5g04092 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Viun5g04092 248 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 33 248 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04092 Viun-Chr5 48239829 48241089 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04092 84 248 C2H2 Transcription Factor Family AT1G80730 43.011 3.24e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun5g04092 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04092 - - vun:114185863 520.776