Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04058 ATGGCCGTTACAACCCTCTCTCTGCTTCCTCCCTCCACGTGTGCCTGCTTCTGCGGCACCGTCCATCTCCGCTCTCACAACAGCTTCATTTCCATTCATTCTCCTTCTTCTTCAACTTCCTTCTCCTCGGTTTCCAATCCCAACCTCGCTCCCACGCGCCGCCGCTTCCACACTGTCTTCGCCGCTTCCTCCGACTACTATTCCACTCTCGGAATCTCCAAATCCGCCACTGGAAAGGAAATCAAAGCTGCTTATCGAAAGCTAGCTCGTCAGTATCATCCTGACGTAAATAAGGAGCCCGGTGCGACTGAAAAGTTCAAAGAGATTAGTGCTGCGTATGAGGTGCTATCAGATGATAAAAAGAGGGCTTTATATGATCAATATGGCGAGGCAGGAGTTAAGAGTGCAGTTGGAGGAGGCTCAGCCTATACGACAAATCCTTTTGATTTGTTTGAGACATTTTTTGGGCCAAGTATGGGTGGCTTTGGTGGCATGGATTCAACTGGATTTGGAACTCGTCGTCGTAGTACTGTTACTAAGGGTGAAGACATTCGGTATGATTTTTCCTTGGAGTTTTCTGAGGCAATTTTTGGAACTGAGAAAGAATTCGATCTTTCTCATTTGGAAACTTGTGAAGCCTGCACTGGTACCGGAGCAAAAATAGGCTCCAAGATGAGAGTATGTTCAACTTGTGGTGGGAGGGGTCAGGTGATGAGGACTGAACAAACACCTTTTGGGTTGTTCTCACAGGTTTCAGTATGTCCAAGCTGTGGAGGGGATGGAGAAGTCATATCTGAATATTGTCGTAAATGCAATGGGGAAGGACGAATACGGGTTAAGAAAAGTATCAAAGTTAAAGTTCCTCCTGGTGTAAGCGCAGGCAGTATTTTAAGAGTTTCTGGGGAGGGTGATGCTGGACCAAGAGGGGGCCCTCCCGGAGATCTTTACGTCTATCTTGACGTGCAAGAGATACCTGGAATTCAAAGGGATGACATTAATCTCTCCTCAACAATATCAATCAGTTATCTAGATGCAATAGTGGGGGCTGTTGTGAAGGTAAAGACGGTTGAAGGCATTTCGGAACTACAAATACCTCCTGGTACCCAACCCGGAGATGTCCTCGTCCTTGCAAGAAAAGGAGTACCAAAATTAAATAAACCATCAATACGTGGTGACCATTTATTCACTGTTAAGGTTACGATACCAAAACGTATTAGTACAAAGGAGCGTGAATTGCTTGAAGAACTTGCTTCTCTAGGTGACACAAGCAGACGTTTAAAATCCCGGCCTAAGACCCACTCTTCAAGTGGTACGGAGACTCCTACACTTCAAAAGGATGAAAGTCCAACAGCAACAGCGGAAGAAAAAAGTGAGAAATCAGAAGAAGAAAATGATGTATGGAATAAATTGAAGGACTTTGCCGGATCTGTGGCAAATGGAGCTCTAAAGTGGCTGAAAGATAATCTCTAG 1470 0.4537 MAVTTLSLLPPSTCACFCGTVHLRSHNSFISIHSPSSSTSFSSVSNPNLAPTRRRFHTVFAASSDYYSTLGISKSATGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRALYDQYGEAGVKSAVGGGSAYTTNPFDLFETFFGPSMGGFGGMDSTGFGTRRRSTVTKGEDIRYDFSLEFSEAIFGTEKEFDLSHLETCEACTGTGAKIGSKMRVCSTCGGRGQVMRTEQTPFGLFSQVSVCPSCGGDGEVISEYCRKCNGEGRIRVKKSIKVKVPPGVSAGSILRVSGEGDAGPRGGPPGDLYVYLDVQEIPGIQRDDINLSSTISISYLDAIVGAVVKVKTVEGISELQIPPGTQPGDVLVLARKGVPKLNKPSIRGDHLFTVKVTIPKRISTKERELLEELASLGDTSRRLKSRPKTHSSSGTETPTLQKDESPTATAEEKSEKSEEENDVWNKLKDFAGSVANGALKWLKDNL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04058 489 CDD DnaJ 65 118 IPR001623 -
Viun5g04058 489 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 34 427 - -
Viun5g04058 489 FunFam Molecular chaperone Hsp40/DnaJ family protein 327 419 - -
Viun5g04058 489 NCBIfam molecular chaperone DnaJ 65 418 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Viun5g04058 489 CDD DnaJ_zf 211 275 IPR001305 GO:0031072|GO:0051082
Viun5g04058 489 ProSitePatterns Nt-dnaJ domain signature. 106 125 IPR018253 -
Viun5g04058 489 Pfam DnaJ C terminal domain 184 402 IPR002939 -
Viun5g04058 489 Gene3D - 327 419 - -
Viun5g04058 489 SUPERFAMILY HSP40/DnaJ peptide-binding domain 179 330 IPR008971 GO:0006457|GO:0051082
Viun5g04058 489 SUPERFAMILY HSP40/DnaJ peptide-binding domain 328 413 IPR008971 GO:0006457|GO:0051082
Viun5g04058 489 CDD DnaJ_C 182 405 - -
Viun5g04058 489 MobiDBLite consensus disorder prediction 423 465 - -
Viun5g04058 489 SUPERFAMILY Chaperone J-domain 61 170 IPR036869 -
Viun5g04058 489 Pfam DnaJ central domain 211 275 IPR001305 GO:0031072|GO:0051082
Viun5g04058 489 FunFam Chaperone protein dnaJ A6 chloroplastic 211 275 - -
Viun5g04058 489 FunFam Putative Mitochondrial DnaJ chaperone 269 317 - -
Viun5g04058 489 Gene3D DnaJ domain 62 167 IPR036869 -
Viun5g04058 489 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 198 278 IPR036410 -
Viun5g04058 489 MobiDBLite consensus disorder prediction 433 448 - -
Viun5g04058 489 Pfam DnaJ domain 65 126 IPR001623 -
Viun5g04058 489 MobiDBLite consensus disorder prediction 449 465 - -
Viun5g04058 489 PRINTS DnaJ domain signature 101 121 IPR001623 -
Viun5g04058 489 PRINTS DnaJ domain signature 67 85 IPR001623 -
Viun5g04058 489 PRINTS DnaJ domain signature 85 100 IPR001623 -
Viun5g04058 489 PRINTS DnaJ domain signature 121 140 IPR001623 -
Viun5g04058 489 SMART dnaj_3 64 121 IPR001623 -
Viun5g04058 489 FunFam Chaperone protein dnaJ A6 chloroplastic 62 167 - -
Viun5g04058 489 Hamap Chaperone protein DnaJ [dnaJ]. 62 473 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Viun5g04058 489 Gene3D - 211 275 - -
Viun5g04058 489 ProSiteProfiles Zinc finger CR-type profile. 198 280 IPR001305 GO:0031072|GO:0051082
Viun5g04058 489 Gene3D - 181 317 - -
Viun5g04058 489 ProSiteProfiles dnaJ domain profile. 65 129 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04058 Viun-Chr5 48088151 48095128 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04058 66 171 C2H2 Transcription Factor Family AT1G74250 38.596 8.71e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04058 K03686 - gmx:100798567 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g04058 5 48088151 48095128 Viun5g04058 5 48088151 48095128 ECH