Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04048 ATGATGGGTATGTTAAGGTGGGGAACCTCGTTTTTGTGTGTGTTCCTTTTGTTCAGTAGTACCTGTCTGGCGAAAGATCAACACATTCATCAGATATATCCTGGCTTCAGTGCATCGCAGCCTGAGTGGAGCGACCATAATGGTTTTTTCTTGATATCCAACAACTCTGCTTTCGGTTTAGGATTCTTCACTACTCTCGATGTTTCGTCGTTTGTTTTAGTTGTCTTGCACTTAAGCAGCTACAAAGTGGTTTGGACTGCGAACAGAGGGTTACTCGTTGGAAAATCTGCAAAATTTGAGTTGGACCGTGGTGGGAATGCATATTTGAAAGGTGATGATGCTGTGGTTTGGGCAACAAATACAACAGGGAATAAAGTGAGAGCCATGGAGTTGCTAGACTCAGGGAATTTGGTGTTGGTTGGGGAAAATGGCACAGCCATTTGGCAGAGTTTTAGCCATCCCACTGATACTCTTTTACCTGGGCAAGAATTTGTGGAGGGAATGATGCTCAAAAGCTTCCACAACAGCTTGAACATGAACTATTATCTTAGTTATAAGGAAGCTGATTTGTTTCTCTACGCAGGATTTGAACCTCCACAAATGTACTGGTCCCTATCAGAAGAAGCTCATAGAAGCTCCAAAAATGGCACTACCAAGGTTCACTCAGCTTCTCTGGTGTCCAATTCATGGAGATTTTTTGACCCAAATGGAGCTTTGCTGTGGAAAATTAACTTCTCTGAGCACTCAGATCCAAACTCATTGTGGGCTGCTACCTTGGATCCAACCGGGGCTATCACTTTTTATGACCTTAACAAAGGGAGGTCTCCCACCCCTGAGGCAGTTAAGGTACCACAAGACCCTTGTGGCACTCCTCAGCCTTGTGATCCTTACTATGTTTGCTTCTTTGAAAACTGGTGCATCTGCCCCAAACTTCTCAGAACTAGTTTTAACTGCAAACCCCCCAACATCTCCACCTGTTCTAGTACTTCAACAGAACTTGTGTATGTCGGTGAAGAGCTTGATTATTTTGCTCTCAAGTACACTACACCGGTCTCAAAATCAACCCTTAACTCTTGCAAAGAGTCTTGTGTAGGAAACTGTTCTTGCCGTGTGCTTTTCTTTGAAAACAGTACCGGAAGATGCTTTCATTTTGATGACACTGGGAGTTTCCAACGCAGTAAGGGGGGCACCGGTGGTTATGTTTCATACATGAAGGTCTCCATTGGTGGTGGTGGTGATGATGGACATGGCAACAAAAATGGAAGGAAAGACACGGTGCTAGTTCTAGTCATAGCAGTTCTCACAGTGCTGGTTATTGTTGGTCTTGTGACAGTATTCTTGTACTACTACAAGAGGAAGAAGAATGATACTAGGTATCCCGAAGACACGTTCGAGGAAGACGATGATTTCTTGGACAGTATCTCTGGGATGCCGGCGCGTTTTACTTTTGCTGCTCTTTGTAGAGCGACAAAGGATTTCTCCACAAAAATTGGAGAAGGAGGTTTTGGCTCAGTGTATTTAGGTGAGCTTGAAGATGGCACCCAATTGGCTGTGAAGAAATTGGAAGGTGTTGGACAAGGAGCCAAAGAGTTCAAAGCAGAAGTGTCCATAATTGGAAGTATTCACCATGTTCATCTGGTGAAGCTCAAAGGGTTCTGCGCTGAGGGTCCTCATCGTCTTCTTGTGTATGAATACATGGCGAGGGGTTCTCTGGACAAATGGATCTTCAAGAACAGTGAGAACAGTTTCTTGCTGAACTGGGAGACAAGGTACAACATTGCAATAGGCACGGCTAAGGGATTGGCGTATCTCCACGAGGAGTGTGAAGTGAGGATTATCCACTGTGACATCAAGCCACAGAATGTTCTTCTTGATGATAATTTCACAGCAAAGGTTTCAGATTTTGGATTGGCCAAGCTAATGAGCCGCGAGCAGAGCCACGTGTTCACAACTCTGAGGGGCACGAGAGGGTATTTAGCACCAGAATGGATTACAAACTATGCAATTTCGGAGAAGAGTGATGTTTTCAGCTATGGCATGCTCTTGCTTGAGATAATCGGAGGGAGGAAGAACTATGATCAATGGGAAGGAGCAGAGAAAGCACATTTTCCTTCTTATGTGTTCAGAATGATGGATGAAGGGAAACTGAAGGAAGTTCTTGATCCAAAGATAGATATTGATGAGAAGGATGAAAGGGTTGAGGCTGCTCTAAAAGTTGCTCTTTGGTGCATACAAGATGATGTGAGTTTGAGGCCTTCCATGACAAAAGTGGCTCAGATGCTTGAAGGTTTGTGTACTGTGCCTGATCCTCCTTCATTATCTCAAGCTGGTACTTATTCAGCTTTCATGAAATTGAGTAGTGGAGAAGCTACTTCATCAGGACAAGCCAGTTTTTTCAGTAATGTGCCTATGTCATGTGTTCAATTATCAGGACCAAGATGA 2442 0.4398 MMGMLRWGTSFLCVFLLFSSTCLAKDQHIHQIYPGFSASQPEWSDHNGFFLISNNSAFGLGFFTTLDVSSFVLVVLHLSSYKVVWTANRGLLVGKSAKFELDRGGNAYLKGDDAVVWATNTTGNKVRAMELLDSGNLVLVGENGTAIWQSFSHPTDTLLPGQEFVEGMMLKSFHNSLNMNYYLSYKEADLFLYAGFEPPQMYWSLSEEAHRSSKNGTTKVHSASLVSNSWRFFDPNGALLWKINFSEHSDPNSLWAATLDPTGAITFYDLNKGRSPTPEAVKVPQDPCGTPQPCDPYYVCFFENWCICPKLLRTSFNCKPPNISTCSSTSTELVYVGEELDYFALKYTTPVSKSTLNSCKESCVGNCSCRVLFFENSTGRCFHFDDTGSFQRSKGGTGGYVSYMKVSIGGGGDDGHGNKNGRKDTVLVLVIAVLTVLVIVGLVTVFLYYYKRKKNDTRYPEDTFEEDDDFLDSISGMPARFTFAALCRATKDFSTKIGEGGFGSVYLGELEDGTQLAVKKLEGVGQGAKEFKAEVSIIGSIHHVHLVKLKGFCAEGPHRLLVYEYMARGSLDKWIFKNSENSFLLNWETRYNIAIGTAKGLAYLHEECEVRIIHCDIKPQNVLLDDNFTAKVSDFGLAKLMSREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVFSYGMLLLEIIGGRKNYDQWEGAEKAHFPSYVFRMMDEGKLKEVLDPKIDIDEKDERVEAALKVALWCIQDDVSLRPSMTKVAQMLEGLCTVPDPPSLSQAGTYSAFMKLSSGEATSSGQASFFSNVPMSCVQLSGPR 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04048 813 CDD STKc_IRAK 497 764 - -
Viun5g04048 813 CDD B_lectin 47 154 IPR001480 -
Viun5g04048 813 FunFam S-receptor-like kinase 5 566 770 - -
Viun5g04048 813 Gene3D Transferase(Phosphotransferase) domain 1 566 766 - -
Viun5g04048 813 SMART blect_4 42 154 IPR001480 -
Viun5g04048 813 PIRSF SRK 2 810 IPR024171 GO:0004674
Viun5g04048 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Viun5g04048 813 Pfam D-mannose binding lectin 83 164 IPR001480 -
Viun5g04048 813 Gene3D Phosphorylase Kinase; domain 1 459 565 - -
Viun5g04048 813 SUPERFAMILY Protein kinase-like (PK-like) 474 762 IPR011009 -
Viun5g04048 813 ProSiteProfiles PAN/Apple domain profile. 326 407 IPR003609 -
Viun5g04048 813 SMART serkin_6 491 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g04048 813 ProSiteProfiles Protein kinase domain profile. 491 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g04048 813 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 40 772 - -
Viun5g04048 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 205 IPR036426 -
Viun5g04048 813 ProSitePatterns Protein kinases ATP-binding region signature. 497 520 IPR017441 GO:0005524
Viun5g04048 813 Gene3D - 41 154 IPR036426 -
Viun5g04048 813 ProSiteProfiles Bulb-type lectin domain profile. 36 152 IPR001480 -
Viun5g04048 813 Pfam Protein kinase domain 494 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g04048 813 FunFam serine/threonine-protein kinase PBS1-like 460 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04048 Viun-Chr5 48026907 48030055 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04048 429 771 Receptor kinase-like Gene Family AT5G20050 44.199 4.52e-89 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Viun5g04048 Pkinase 6.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04048 - - gmx:100816004 1409.82