Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04030 ATGCTGCTGCTACACAACATCGAGGAAACCATTAAGATTGGGAAAGGAATAACCAAACTATATGCAACAATTGATCTGGAAAAAGCACGCGTGGGAAGAACAAGAATCATAGAAAAAGAACACACAAATCCTAAATGGTGCGAGTCTTTTCACATTTACTGTGCTCATACGGCATCAAATGTCATATTCACAGTGAAAGATGACAACCCAATCGGTGCAACCTTGATCGGAAGAGCATACATTCCCGTCGAGGAGATTCTGGACGGCAAAGAAATAGATCGATGGGTTGAAATCTTGGACGAACACAAAAAACCAATACATTCACATTCCAAGATCCATGTGAAGCTCCAGTACTTCGATGTTTCAAAAGACCTCAACTGGGGCCAAGGAATCAGAACTCCTAAATTCCCCGGAGTTCCGTACACTTACTTCTCACAGAGACAAGGATGTAGGGTTTCCTTGTACCAAGATGCTCATGTTCCAAACAACTTTGTTCCGAGAATACCACTTTCTGGAGGCCGCACTTACCAACCTCGTAGATGTTGGGAAGATGTTTTTGATGCAATCAACAACGCACAGCACTTGATATACATTACGGGGTGGTCTGTGTACGCTGAGATCACGTTGGTGAGAGATTCTAGGAGACCAAAACCTGGAGGAGATGCAACACTCGGTGAGCTTCTGAAGAAAAAAGCACGTGATGGTGTTAGGGTTTTGATGCTTGTGTGGGATGATAGAACTTCTGTTCCTCTGTTGAAAGAAGATGGGTTGATGGCTACTCATGATGAAGATACCGGGAACTACTTCTACGACAGTGATGTGCACTGTGTTCTATGCCCTCGCAACCCTGATGACGGTGGAAGCGTTGTTCAGGATATAGAAATTTTCTCCATGTTTACGCATCATCAGAAAATCGTGGTTGTGGACAGTGCTTTACCTAGATCAGATAATAAACGAAGAATTGTGAGTTTTGTGGGGGGGATTGATCTCTGTGATGGAAGATACGACACACAATTTCACTCACTTTTCAGAACGCTGGGAACAGCGCATCACGATGATTTTCATCAACCTAATTTTCCACACACTACGGTGAAAAAAGGTGGTCCAAGGGAACCATGGCACGACATTCATTCTCGGCTTGAAGGGCCAGTTGCATGGGATGTTTTGTTCAACTTTGAGCAGAGATGGAGGAAGCAAGGTGGAAAGGACTTGCTGATTCCTCTGAGAGACCTTGAAGATTTGATTATTCCTCCATCGCCGGTAACTTACCCTGATGATCACGAGACATGGAACGTGCAGTTCTTTCGATCCATTGATGGTGGAGCGGCTTCTGGGTTCCCCGAGACTCCTGAAGAAGCTGCAAGATCTGGACTCATCAGTGGGAAGGATAACGTAATCGACAGAGGCATTCAAGATGCTTACATCAACGCCATTCGAAGAGCGAAGAACTTCATCTACATTGAGAATCAGTACTTCCTCGGAAGCTCTTATGCTTGGAGTGGTGGTGATGGAATTAAGCCCGAAGACATTGGTGCGTTGCATCTGATACCGAGGGAGCTTTCTCTTAAGATTGTTAGTAAGATTGAAGCTGGGGAAAGGTTCAGTGTTTATGTTGTGATTCCGATGTGGCCGGAGGGTTACCCGGAGAAAGGAACAGTTCAGGCAATATTGGACTGGCAGCGGAGAACAATGGACATGATGTACAAGGATGTTGTCGGAGCATTAAAGGGCAAGGGGATTGAGGAAGATCCTCGGAACTATTTGACATTCTTCTGTCTTGGTAACAGAGAGGTGAAGAAAGAGGGAGAGTACGAGCCTCCAGAAAGACCAGATCCCGATACAGATTATATCAGAGCTCAAGAGTCTCGACGCTTCATGATTTATGTTCATGCCAAGATGATGATAGTTGATGACGAATACATAATCATTGGATCTGCCAACATAAACCAGAGATCAATGGATGGTGCCAGAGACTCGGAGATTGCAATGGGTGCATATCAACCCTATCATCTGAGTAGAAACGAGGGTGCAAGGGGTGAGATCCATGGTTTTCGCATGTCATTGTGGTATGAACACGTTGGCATGCTTCATGAGTCCTTTCTCCACCCTGAAAGTGAAGAATGTATAAAGAAGATAAACGAGATGGGTGAAAAGTATTGGGATCTTTACACTACCGAGCCACTTGAAGGAGACCTTCCCGGTCACCTTCTCCGGTACCCTATTGCAGTTTCCGGCGAAGGAAGTGTGACACAGCTGAAAGGATTTGAGTTCTTCCCCGACACGAAGGCTCCTGTTCTTGGAGTCAAATCGGACTACATGCCACCTATTCTTACTACTTAG 2340 0.4517 MLLLHNIEETIKIGKGITKLYATIDLEKARVGRTRIIEKEHTNPKWCESFHIYCAHTASNVIFTVKDDNPIGATLIGRAYIPVEEILDGKEIDRWVEILDEHKKPIHSHSKIHVKLQYFDVSKDLNWGQGIRTPKFPGVPYTYFSQRQGCRVSLYQDAHVPNNFVPRIPLSGGRTYQPRRCWEDVFDAINNAQHLIYITGWSVYAEITLVRDSRRPKPGGDATLGELLKKKARDGVRVLMLVWDDRTSVPLLKEDGLMATHDEDTGNYFYDSDVHCVLCPRNPDDGGSVVQDIEIFSMFTHHQKIVVVDSALPRSDNKRRIVSFVGGIDLCDGRYDTQFHSLFRTLGTAHHDDFHQPNFPHTTVKKGGPREPWHDIHSRLEGPVAWDVLFNFEQRWRKQGGKDLLIPLRDLEDLIIPPSPVTYPDDHETWNVQFFRSIDGGAASGFPETPEEAARSGLISGKDNVIDRGIQDAYINAIRRAKNFIYIENQYFLGSSYAWSGGDGIKPEDIGALHLIPRELSLKIVSKIEAGERFSVYVVIPMWPEGYPEKGTVQAILDWQRRTMDMMYKDVVGALKGKGIEEDPRNYLTFFCLGNREVKKEGEYEPPERPDPDTDYIRAQESRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLSRNEGARGEIHGFRMSLWYEHVGMLHESFLHPESEECIKKINEMGEKYWDLYTTEPLEGDLPGHLLRYPIAVSGEGSVTQLKGFEFFPDTKAPVLGVKSDYMPPILTT 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04030 779 PIRSF PLD_plant 3 779 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Viun5g04030 779 FunFam Phospholipase D delta 172 414 - -
Viun5g04030 779 FunFam Phospholipase D 437 671 - -
Viun5g04030 779 SUPERFAMILY Phospholipase D/nuclease 123 412 - -
Viun5g04030 779 ProSiteProfiles C2 domain profile. 1 96 IPR000008 -
Viun5g04030 779 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 121 IPR035892 -
Viun5g04030 779 CDD C2_plant_PLD 14 119 - -
Viun5g04030 779 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 625 652 IPR001736 GO:0003824
Viun5g04030 779 Gene3D Endonuclease Chain A 444 668 - -
Viun5g04030 779 Pfam Phospholipase D C terminal 698 768 IPR024632 -
Viun5g04030 779 Gene3D Endonuclease Chain A 171 409 - -
Viun5g04030 779 Pfam C2 domain 15 98 IPR000008 -
Viun5g04030 779 PANTHER PHOSPHOLIPASE D 18 767 IPR015679 -
Viun5g04030 779 Pfam Phospholipase D Active site motif 298 334 IPR001736 GO:0003824
Viun5g04030 779 Pfam Phospholipase D Active site motif 626 652 IPR001736 GO:0003824
Viun5g04030 779 SMART C2_3c 6 95 IPR000008 -
Viun5g04030 779 Gene3D C2 domain 5 127 IPR035892 -
Viun5g04030 779 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 297 334 IPR001736 GO:0003824
Viun5g04030 779 SMART pld_4 297 334 IPR001736 GO:0003824
Viun5g04030 779 SMART pld_4 625 652 IPR001736 GO:0003824
Viun5g04030 779 SUPERFAMILY Phospholipase D/nuclease 417 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04030 Viun-Chr5 47986641 47990606 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04030 3 779 Phospholipase D Gene Family (Wang group) AT3G15730 76.637 0.0 1294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04030 K01115 - gmx:100784434 1386.32