Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04028 ATGGGAGAAGTTCTGGTTCATGGGACCCTCCATGCCACAATCTATGAGGTGGATAACCTGAAGGCTGGTAATGCTGGTAATATTTTAACCAAGCTGCTACACAACATCGAGGAAACCATTAAGATTGGGAAAGGAATAACCAAACTATATGCAACAATTGATCTGGAAAAAGCACGCGTGGGAAGAACAAGAATCATAGAAAAAGAACACACAAATCCTAAATGGTGCGAGTCTTTTCACATTTACTGTGCTCATACGGCATCAAATGTCATATTCACAGTGAAAGATGACAACCCAATCGGTGCAACCTTGATCGGAAGAGCATACATTCCCGTCGAGGAGATTCTGGACGGCAAAGAAATAGATCGATGGGTTGAAATCTTGGACGAACACAAAAAACCAATACATTCACATTCCAAGATCCATGTGAAGCTCCAGTACTTCGATGTTTCAAAAGACCTCAACTGGGGCCAAGGAATCAGAACTCCTAAATTCCCCGGAGTTCCGTACACTTACTTCTCACAGAGACAAGGATGTAGGGTTTCCTTGTACCAAGATGCTCATGTTCCAAACAACTTTGTTCCGAGAATACCACTTTCTGGAGGCCGCACTTACCAACCTCGTAGATGTTGGGAAGATGTTTTTGATGCAATCAACAACGCACAGCACTTGATATACATTACGGGGTGGTCTGTGTACGCTGAGATCACGTTGGTGAGAGATTCTAGGAGACCAAAACCTGGAGGAGATGCAACACTCGGTGAGCTTCTGAAGAAAAAAGCACGTGATGGTGTTAGGGTTTTGATGCTTGTGTGGGATGATAGAACTTCTGTTCCTCTGTTGAAAGAAGATGGGTTGATGGCTACTCATGATGAAGATACCGGGAACTACTTCTACGACAGTGATGTGCACTGTGTTCTATGCCCTCGCAACCCTGATGACGGTGGAAGCGTTGTTCAGGATATAGAAATTTTCTCCATGTTTACGCATCATCAGAAAATCGTGGTTGTGGACAGTGCTTTACCTAGATCAGATAATAAACGAAGAATTGTGAGTTTTGTGGGGGGGATTGATCTCTGTGATGGAAGATACGACACACAATTTCACTCACTTTTCAGAACGCTGGGAACAGCGCATCACGATGATTTTCATCAACCTAATTTTCCACACACTACGGTGAAAAAAGGTGGTCCAAGGGAACCATGGCACGACATTCATTCTCGGCTTGAAGGGCCAGTTGCATGGGATGTTTTGTTCAACTTTGAGCAGAGATGGAGGAAGCAAGGTGGAAAGGACTTGCTGATTCCTCTGAGAGACCTTGAAGATTTGATTATTCCTCCATCGCCGGTAACTTACCCTGATGATCACGAGACATGGAACGTGCAGTTCTTTCGATCCATTGATGGTGGAGCGGCTTCTGGGTTCCCCGAGACTCCTGAAGAAGCTGCAAGATCTGGACTCATCAGTGGGAAGGATAACGTAATCGACAGAGGCATTCAAGATGCTTACATCAACGCCATTCGAAGAGCGAAGAACTTCATCTACATTGAGAATCAGTACTTCCTCGGAAGCTCTTATGCTTGGAGTGGTGGTGATGGAATTAAGCCCGAAGACATTGGTGCGTTGCATCTGATACCGAGGGAGCTTTCTCTTAAGATTGTTAGTAAGATTGAAGCTGGGGAAAGGTTCAGTGTTTATGTTGTGATTCCGATGTGGCCGGAGGGTTACCCGGAGAAAGGAACAGTTCAGGCAATATTGGACTGGCAGCGGAGAACAATGGACATGATGTACAAGGATGTTGTCGGAGCATTAAAGGGCAAGGGGATTGAGGAAGATCCTCGGAACTATTTGACATTCTTCTGTCTTGGTAACAGAGAGGTGAAGAAAGAGGGAGAGTACGAGCCTCCAGAAAGACCAGATCCCGATACAGATTATATCAGAGCTCAAGAGTCTCGACGCTTCATGATTTATGTTCATGCCAAGATGATGATAGTTGATGACGAATACATAATCATTGGATCTGCCAACATAAACCAGAGATCAATGGATGGTGCCAGAGACTCGGAGATTGCAATGGGTGCATATCAACCCTATCATCTGAGTAGAAACGAGGGTGCAAGGGGTGAGATCCATGGTTTTCGCATGTCATTGTGGTATGAACACGTTGGCATGCTTCATGAGTCCTTTCTCCACCCTGAAAGTGAAGAATGTATAAAGAAGATAAACGAGATGGGTGAAAAGTATTGGGATCTTTACACTACCGAGCCACTTGAAGGAGACCTTCCCGGTCACCTTCTCCGGTACCCTATTGCAGTTTCCGGCGAAGGAAGTGTGACACAGCTGAAAGGATTTGAGTTCTTCCCCGACACGAAGGCTCCTGTTCTTGGAGTCAAATCGGACTACATGCCACCTATTCTTACTACTTAG 2427 0.4516 MGEVLVHGTLHATIYEVDNLKAGNAGNILTKLLHNIEETIKIGKGITKLYATIDLEKARVGRTRIIEKEHTNPKWCESFHIYCAHTASNVIFTVKDDNPIGATLIGRAYIPVEEILDGKEIDRWVEILDEHKKPIHSHSKIHVKLQYFDVSKDLNWGQGIRTPKFPGVPYTYFSQRQGCRVSLYQDAHVPNNFVPRIPLSGGRTYQPRRCWEDVFDAINNAQHLIYITGWSVYAEITLVRDSRRPKPGGDATLGELLKKKARDGVRVLMLVWDDRTSVPLLKEDGLMATHDEDTGNYFYDSDVHCVLCPRNPDDGGSVVQDIEIFSMFTHHQKIVVVDSALPRSDNKRRIVSFVGGIDLCDGRYDTQFHSLFRTLGTAHHDDFHQPNFPHTTVKKGGPREPWHDIHSRLEGPVAWDVLFNFEQRWRKQGGKDLLIPLRDLEDLIIPPSPVTYPDDHETWNVQFFRSIDGGAASGFPETPEEAARSGLISGKDNVIDRGIQDAYINAIRRAKNFIYIENQYFLGSSYAWSGGDGIKPEDIGALHLIPRELSLKIVSKIEAGERFSVYVVIPMWPEGYPEKGTVQAILDWQRRTMDMMYKDVVGALKGKGIEEDPRNYLTFFCLGNREVKKEGEYEPPERPDPDTDYIRAQESRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLSRNEGARGEIHGFRMSLWYEHVGMLHESFLHPESEECIKKINEMGEKYWDLYTTEPLEGDLPGHLLRYPIAVSGEGSVTQLKGFEFFPDTKAPVLGVKSDYMPPILTT 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04028 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 363 IPR001736 GO:0003824
Viun5g04028 808 Pfam C2 domain 8 127 IPR000008 -
Viun5g04028 808 PIRSF PLD_plant 1 808 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Viun5g04028 808 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 150 IPR035892 -
Viun5g04028 808 SUPERFAMILY Phospholipase D/nuclease 152 441 - -
Viun5g04028 808 FunFam Phospholipase D delta 201 443 - -
Viun5g04028 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 654 681 IPR001736 GO:0003824
Viun5g04028 808 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Viun5g04028 808 SMART C2_3c 9 124 IPR000008 -
Viun5g04028 808 FunFam Phospholipase D 466 700 - -
Viun5g04028 808 Pfam Phospholipase D C terminal 727 797 IPR024632 -
Viun5g04028 808 Gene3D Endonuclease Chain A 200 438 - -
Viun5g04028 808 PANTHER PHOSPHOLIPASE D 4 796 IPR015679 -
Viun5g04028 808 SMART pld_4 326 363 IPR001736 GO:0003824
Viun5g04028 808 SMART pld_4 654 681 IPR001736 GO:0003824
Viun5g04028 808 Gene3D Endonuclease Chain A 473 697 - -
Viun5g04028 808 Gene3D C2 domain 5 156 IPR035892 -
Viun5g04028 808 Pfam Phospholipase D Active site motif 655 681 IPR001736 GO:0003824
Viun5g04028 808 Pfam Phospholipase D Active site motif 327 363 IPR001736 GO:0003824
Viun5g04028 808 CDD C2_plant_PLD 2 148 - -
Viun5g04028 808 SUPERFAMILY Phospholipase D/nuclease 446 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04028 Viun-Chr5 47986439 47990619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g04028 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 75.832 0.0 1325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04028 K01115 - gmx:100784434 1428.31