Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03998 ATGTCACAGCGAATCCACCAAGTTTCTCCGGATAAGGGTCACACACTTCCCATATTGAAGAAAATACTTGATCTCGACACTAAAATTCAGGATATGAAGAAGCATCATATAGCACTGTCTGATGAAGTCCGTGCAGCTTTTCCGGTTGAATCTTTTCCGGGCACTGCTGTTTTGAAGTCCGTGCAGACTAGAAAGTACTTGGATGCGTGGTGTGTTTTCTTTTGGGCTACAACACCAACACTCTTCTCCCTTTCCACATTTGGACTCTATGCACTGATGGGACATCAACTTGATGCTGCAATGGTTTTCAGTTGTCTTGCATTGTTCAACACCCTTATTTCACCACTAAATTCATTCCCTTGGGTAATTAATGGATTGATTGATGCCATCATATCTTCTGGACGGTTGAGTAGGTTTCTCGCTTGTCCTGAACATAAATTTAAAAGGCAACAGCCTGATTCTGATCAAGGTTTGGGTGTATTTATCAAAGATGCATGTTGTACTTTGTCAAGTAGTGAGGAACAGGCATTAAATATGGTGTTGAATCATGTGACTCTAAGTGTGTCCCAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCAGGTAAATCATCCCTGTTATATTCAATCCTTGGAGAAATGCAGCTTGTTCGTGGCTCTGTTTATTCCAATGAATCCACTGCTTATGTACCACAGGTCCCTTGGATTTTATCTGGAAGGGTGCACGACAACATATTATTCGGGAAAATTTATGATCCTGAAAGGTCCCGTGGATTTTATCTGGAACGGTGCGTGACAACATATTATTTGGGAAAAGTTATGATCCTGAAAGGTTCAGTGAATGTGGATGGGTATTTACTTGCGTTATCCTTGGGGCTCACCTCTATAATTAATTCCTTGATGATGCAGATTGAATATCCAGAGACTGTAGACCTTGCCAAGTTGAGGCACCGATTTATGTCCTCCTATGAACAGAAGGTGCAACCCTTTGATAAAAGATATCAGTACCTTCTGTTGTAG 1023 0.4145 MSQRIHQVSPDKGHTLPILKKILDLDTKIQDMKKHHIALSDEVRAAFPVESFPGTAVLKSVQTRKYLDAWCVFFWATTPTLFSLSTFGLYALMGHQLDAAMVFSCLALFNTLISPLNSFPWVINGLIDAIISSGRLSRFLACPEHKFKRQQPDSDQGLGVFIKDACCTLSSSEEQALNMVLNHVTLSVSQGSFVAVIGEVGSGKSSLLYSILGEMQLVRGSVYSNESTAYVPQVPWILSGRVHDNILFGKIYDPERSRGFYLERCVTTYYLGKVMILKGSVNVDGYLLALSLGLTSIINSLMMQIEYPETVDLAKLRHRFMSSYEQKVQPFDKRYQYLLL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03998 340 Gene3D ABC transporter type 1, transmembrane domain 55 145 IPR036640 GO:0005524|GO:0016020
Viun5g03998 340 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 56 128 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g03998 340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 293 IPR027417 -
Viun5g03998 340 Pfam ABC transporter 181 228 IPR003439 GO:0005524
Viun5g03998 340 SUPERFAMILY ABC transporter transmembrane region 71 144 IPR036640 GO:0005524|GO:0016020
Viun5g03998 340 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 58 258 - -
Viun5g03998 340 Gene3D - 146 305 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03998 Viun-Chr5 47832727 47847940 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03998 300 340 C2H2 Transcription Factor Family AT2G32600 75.610 1.85e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03998 K05674 - gmx:100814181 349.362