Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03989 ATGGACGATTTCTTGCATCTAATTTGCCCTAATTCTCCATTCATTTGGGATGGAGAGAGGTTCTCTGACTGCTTTGAAGACATTGTTTTAGGTTTTGGGGTTAACATAGTGACTGCTGTTATGGTCGTTGTGCTTGGATTTAGCCAGAAGATTGATCGAGGAGTTCGGAGATCAGATGGCCAGATGACCTTTCCAGAAAAAATTGTCCTGGATTTTATACCAGCTGTTGGAGTATGTCTTTCAATTGTAGACATATTTTTTCTGTGGAAGAAAGAGCATAGTAGTCACTTTGTTGGATATCATAAATGGTTCTATAGCTGTTCTGAGTTGATGGTGTGGATAAATATTATTTTCTTCACAAAGCGTGGCAGCAGTCACCACATTGTCTTCAATCGTGTTTTATGTTTCTGGTGGATTCCTAAAGCAATATTGACAGTTTTGTATTTGATGACAAAGATTTCATCATTGAAGGTTTCAATTTGCATCACGGAGAGCTTAGTTGTTCTCTTGAATATCTCATTTGGCATAGCCATCAATGTGATCAGGATAAAGAGACCATCTTACAAAAGCAGTTTTTTGGAAGATCCACTTCTTTCGAATGGCGTGGACCTTGAGGAAGGTGGTTATCAAGACCTTGGAAATGATGGAAACTTTTGGGATTTGATGACTTTCAACTTCATAACTCCAGTAATGAATCATGGTGTGGTAAAACAATTAGACTCTGAGGACCTGTTGCCTCTACCGACTGATATGGGTCCTTCTTCCTGTCATGATGTGATTTTATCCTGCTGGCAAGCTCAACTGAGTAACAATGGCTCTAATCCATCTTTGTTTAGAGCACTCTGTAGTGCATATGGATGGCCATATCTCCGCCTGGGTTTATTGAAGGTGATTAATGATTGTATTGGTTTTGTGGGGCCATTGCTTCTCAATAAACTGATCCAGTTTCTTCAACAAGGTTCAGTGAATGTGGATGGGTATTTACTTGCATTATCCTTGGGGCTCACCTCTATAATTAAATCCTTTTTAGATACACAATATACTTTTCATCTTTCCAAACTGAAGCTGAAGCTGCGATCTAGTATCGTGACTCTAATCTATGAGAAGTGTCTTCGAGTGAACTTAGCAGAGCGTTCAAAATTTACAAATGGAGAAATTCAGACATTTATGTCAGTGGATGCTGACCGAACTGTAAACTTATGTAATAGTTTCCATGATATGTGGAGCCTGCCTCTACAAATTGGAGTGGCTCTCTATCTTTTGTATACTCAAGTCAAATTTGCATTTGTATCTGGATTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATAGCACAATTGATTGCAAGGGCTACTGAGCAGATGATGAAGGAGAAAGATGAAAGGATTCGTAAGACAGGAGAAATTTTGACTTATATTCGCACTTTGAAGATGTATGGATGGGAACTTCTTTTTTCTAGTTGGTTGATGGATACAAGATCTTTGGAAGTCAAACACTTAGCTACTCGAAAGTACTTGGATGCGTGGTGTGTTTTCTTTTGGGCTACAACACCAACACTCTTTTCCCTTTTCACATTTGGACTCTATGCACTGATGGGACATCAACTTGATGCTGCAATGGTTTTCACTTGTCTTGCATTGTTCAACACCCTTATTTCACCACTAAATTCATTCCCTTGGGTAATTAATGGATTGATTGATGCCATCATATCTTCTAGACGGTTGAGTAGGTTTCTCGCTTGTTCTGAACATAAATTTAAAGTGGGAGACACAAATTCCTCTCCATCATCATTCCTAAGTGAACAACCTGATTCTGTTCAACGTTTGGGTGTATTTATCCAAGATGCATGTTGTACTTGGTCAAGTAGTGAGGAACAGGCATTAAATATGGTGTTGAATCATGTGACTCTAAGTGTGTCCCAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCAGGTAAATCATCCCTGTTATATTCAATCCTTGGAGAAATGCAACTTGTTCGTGGCTCTATTTATTCCAATGAATCCATTGCTTATGTACCACAGGTCCCTTGGATTTTATCTGGAACGGTGCGCGACAACATATTATTCGGGAAAAGTTATGATCCTGAAAGGTATACTGATACACTGAAGGCATGTGCATTAGATGTTGATGTCTCATTGATGATTGGAGGTGACATGGCTTATATTGGAGAGAAAGGAGTCAACTTATCAGGTGGACAGAGAGCTCGTCTTGCCTTGGCAAGGGCATTGTATCATGACTCAGCTGTTGTTATGCTTGATGATGTCCTGAGTGCAGTAGATGTACAAGTTGCTCAATGTATCTTATACAATGCCCTTCTAGGCCCCCTTATGCAGAGAAAAACCCGATTGCTCTGTACCCACAATATTCAGGCAATATCTTCTGCTGACAAGATTGTTGTAATGGACAAGGGACGCATAAAGTGGATAGGAAATTCAGATGACTTTCCAATTAATTCATGTACACAATTCTCTCCGCTGAATGAAATTGATTCAGCTTTACAGAATCATGGAGAATCTTGCAGCCCAAATCTTTCTTCCAAATCCGAGGAGCAGTCTCTTCTTGGCACAGGTATTGTGCGTGCTCTGGAGGGAGCAGAGGAGATCGTTGAAGTTGAGCTGAGGAAAGAGGGAAAAGTTGAAATTGGAGTGTATAAGAATTATGCTGTCTTCACTGGCTGGTTCATGACAGTCATTATATGCCTATCAGCTATTCTGATGCAAGCTTCTCGTAATGGAAACGATTTATGGTTGTCATATTGGGTTGATACAACAACAGAAAGCAGTCAGACAAGATATTCTGTGTCTTTCTATCTGGCTATACTGTGTCTCTTTTGTATTATTAATTCCTTTTTCACATTGGTGAGGGCATTCTCTTTTGCTTTTGGTGGATTACAAGCTGCAACTAAGGTACACAATAAATTGCTCAACAAGCTTATGAATGCGCCTGTCCAATTCTTTGATCAGACCCCTGGTGGGAGAATACTGAACAGGTTATCTTCAGATCTTTATACCATTGATGATTCACTTCCATTCATTCTAAACATTCTCCTAGCGAATTTCGTAGGCCTGTTGGGTATTACAATAATTTTGTGTTACGTACAGGTCTTCTTCTTACTCTTGCTATTGCCATTTTGGTATATCTACAGTAGACTTCAGTTCTTCTACAGGTCAACATCGAGAGAATTACGACGACTGGATAGTGTTTCACGTTCTCCAATATACTCATCATTCACTGAAACACTTGATGGATCATCAACTATTAGGGCGTTTAAATCTGAGGACTTTTTCTTTACCAAATTCACTGAACATGTAACCTTGTATCAGAAGACTTCCTACACAGAGATAGTAGCAAGTTTGTGGCTTTCCTTGCGTCTTCAGTTATTAGGTGCATTTATCATCTCTTTCATAGCTGTGATGGCTGTTATTGGATCTCGTGGCAGTCTGCCCATCAACTTTGGTACCCCAGGACTGGTAGGATTGGCCCTCTCATATGCAGCTCCAATTGTGTCCTTATTGGGAAGTTTTTTGTCAAGCTTCACTGAAACAGAAAAGGAGATGGTTTCAGTTGAAAGAACTCTTCAATACATGGACATTCCTCAAGAAGAACAAACCGGAGGCCTATACTTGAATCCAGATTGGCCAAATCAAGGATTTATCGAATTTGATTGTGTTACTTTGAAATATATGCCATCTTTGCCAGCTGCACTCTGCAATCTTAGTTTTAGAATTGCTGGAGGAACCCAAGTTGGAATAATTGGAAGAACAGGTGCTGGAAAGTCCAGTGTGTTAAATGCTCTTTTCCGTCTTACTCCAATATGTACAGGCTCCATCTCAATTGATGGCGTGGATATTAAAAATATTTCTGTCAGAGAACTACGTACACATTTGGCCATTGTCCCTCAGAGTCCATTTTTGTTCGAAGGATCATTAAGGGATAACCTAGATCCTTTCAAAATGAATGATGACTTAAAAATTTTGAATGCATTGGAAAAGTGCCATGTGAAAGACGAAGTAGAAGCAGCTGGAGGGCTGGACCTTCTTGTAAAGGAAGGAGGGACGTCATTTTCAGTTGGCCAGCGGCAACTTCTTTGCCTTGCCCGTGCACTTTTGAAATCTTCCAAGGTTCTCTGTTTGGATGAATGCACAGCCAATGTAGACCTTCAAACTGCTTCACTGCTGCAAACTACCATATCCGGTGAATGCAAAGGAATGACAGTTCTCACAATTGCTCACCGGATTTCAACTGTTATAAACATGGACAACATTCTGATTCTTGACCATGGGAAACTGGCTGAACAGGGTAACCCACAGGTTCTTCTGAAAGATGAGACCTCCATATTTTCTAGTTTTGTTGGAGCTTCAGCAATGTAG 4407 0.3998 MDDFLHLICPNSPFIWDGERFSDCFEDIVLGFGVNIVTAVMVVVLGFSQKIDRGVRRSDGQMTFPEKIVLDFIPAVGVCLSIVDIFFLWKKEHSSHFVGYHKWFYSCSELMVWINIIFFTKRGSSHHIVFNRVLCFWWIPKAILTVLYLMTKISSLKVSICITESLVVLLNISFGIAINVIRIKRPSYKSSFLEDPLLSNGVDLEEGGYQDLGNDGNFWDLMTFNFITPVMNHGVVKQLDSEDLLPLPTDMGPSSCHDVILSCWQAQLSNNGSNPSLFRALCSAYGWPYLRLGLLKVINDCIGFVGPLLLNKLIQFLQQGSVNVDGYLLALSLGLTSIIKSFLDTQYTFHLSKLKLKLRSSIVTLIYEKCLRVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIAQLIARATEQMMKEKDERIRKTGEILTYIRTLKMYGWELLFSSWLMDTRSLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLYALMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLACSEHKFKVGDTNSSPSSFLSEQPDSVQRLGVFIQDACCTWSSSEEQALNMVLNHVTLSVSQGSFVAVIGEVGSGKSSLLYSILGEMQLVRGSIYSNESIAYVPQVPWILSGTVRDNILFGKSYDPERYTDTLKACALDVDVSLMIGGDMAYIGEKGVNLSGGQRARLALARALYHDSAVVMLDDVLSAVDVQVAQCILYNALLGPLMQRKTRLLCTHNIQAISSADKIVVMDKGRIKWIGNSDDFPINSCTQFSPLNEIDSALQNHGESCSPNLSSKSEEQSLLGTGIVRALEGAEEIVEVELRKEGKVEIGVYKNYAVFTGWFMTVIICLSAILMQASRNGNDLWLSYWVDTTTESSQTRYSVSFYLAILCLFCIINSFFTLVRAFSFAFGGLQAATKVHNKLLNKLMNAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFILNILLANFVGLLGITIILCYVQVFFLLLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYSSFTETLDGSSTIRAFKSEDFFFTKFTEHVTLYQKTSYTEIVASLWLSLRLQLLGAFIISFIAVMAVIGSRGSLPINFGTPGLVGLALSYAAPIVSLLGSFLSSFTETEKEMVSVERTLQYMDIPQEEQTGGLYLNPDWPNQGFIEFDCVTLKYMPSLPAALCNLSFRIAGGTQVGIIGRTGAGKSSVLNALFRLTPICTGSISIDGVDIKNISVRELRTHLAIVPQSPFLFEGSLRDNLDPFKMNDDLKILNALEKCHVKDEVEAAGGLDLLVKEGGTSFSVGQRQLLCLARALLKSSKVLCLDECTANVDLQTASLLQTTISGECKGMTVLTIAHRISTVINMDNILILDHGKLAEQGNPQVLLKDETSIFSSFVGASAM 1468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03989 1468 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 217 1465 - -
Viun5g03989 1468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1225 1455 IPR027417 -
Viun5g03989 1468 Pfam ABC transporter transmembrane region 909 1156 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g03989 1468 Pfam ABC transporter transmembrane region 293 557 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g03989 1468 Gene3D - 603 844 IPR027417 -
Viun5g03989 1468 FunFam Multidrug resistance-associated protein ABC domain protein 268 586 - -
Viun5g03989 1468 FunFam ATP-binding cassette (ABC) transporter, putative 1218 1465 - -
Viun5g03989 1468 SUPERFAMILY ABC transporter transmembrane region 905 1213 IPR036640 GO:0005524|GO:0016020
Viun5g03989 1468 FunFam ABC transporter C family member 5 873 1214 - -
Viun5g03989 1468 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 909 1196 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g03989 1468 Pfam ABC transporter 1249 1395 IPR003439 GO:0005524
Viun5g03989 1468 CDD ABCC_MRP_domain1 615 817 - -
Viun5g03989 1468 CDD ABC_6TM_MRP7_D2_like 908 1208 - -
Viun5g03989 1468 CDD ABC_6TM_MRP7_D1_like 292 577 - -
Viun5g03989 1468 Gene3D ABC transporter type 1, transmembrane domain 876 1215 IPR036640 GO:0005524|GO:0016020
Viun5g03989 1468 SUPERFAMILY ABC transporter transmembrane region 278 577 IPR036640 GO:0005524|GO:0016020
Viun5g03989 1468 CDD ABCC_MRP_domain2 1229 1448 - -
Viun5g03989 1468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 629 827 IPR027417 -
Viun5g03989 1468 SMART AAA_5 1257 1435 IPR003593 GO:0016887
Viun5g03989 1468 SMART AAA_5 643 817 IPR003593 GO:0016887
Viun5g03989 1468 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 294 569 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g03989 1468 FunFam ABC transporter C family member 13 596 850 - -
Viun5g03989 1468 Gene3D - 1218 1465 IPR027417 -
Viun5g03989 1468 ProSitePatterns ABC transporters family signature. 1367 1381 IPR017871 GO:0005524|GO:0016887
Viun5g03989 1468 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524|GO:0016887
Viun5g03989 1468 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1231 1464 IPR003439 GO:0005524
Viun5g03989 1468 Pfam ABC transporter 634 766 IPR003439 GO:0005524
Viun5g03989 1468 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 613 840 IPR003439 GO:0005524
Viun5g03989 1468 Gene3D ABC transporter type 1, transmembrane domain 278 584 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03989 Viun-Chr5 47727124 47742167 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03989 633 827 Calmodulin-binding Proteins AT2G36910 29.524 5.67e-18 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03989 K05674 - gmx:100814181 2623.58