Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03988 ATGGACGATTTCTTGCATCTAATTTGCCCTAATTCTCCATTCATTTGGGATGGAGAGAGGTTCTCTGACTGCTTTGAAGACATTGTTTTAGGTTTTGGGGTTAACATAGTGACTGCTGTTATGGTCGTTGTGCTTGGATTTAGCCAGAAGATTGATCGAGGAGTTCGGAGATCAGATGGCCAGATGACCTTTCCAGAAAAAATTGTCCTGGATTTTATACCAGCTGTTGGAGTATGTCTTTCAATTGTAGACATATTTTTTCTGTGGAAGAAAGAGCATAGTAGTCACTTTGTTGGATATCATAAATGGTTCTATAGCTGTTCTGAGTTGATGGTGTGGATAAATATTATTTTCTTCACAAAGCGTGGCAGCAGTCACCACATTGTCTTCAATCGTGTTTTATGTTTCTGGTGGATTCCTAAAGCAATATTGACAGTTTTGTATTTGATGACAAAGATTTCATCATTGAAGGTTTCAATTTGCATCACGGAGAGCTTAGTTGTTCTCTTGAATATCTCATTTGGCATAGCCATCAATGTGATCAGGATAAAGAGACCATCTTACAAAAGCAGTTTTTTGGAAGATCCACTTCTTTCGAATGGCGTGGACCTTGAGGAAGGTGGTTATCAAGACCTTGGAAATGATGGAAACTTTTGGGATTTGATGACTTTCAACTTCATAACTCCAGTAATGAATCATGGTGTGGTAAAACAATTAGACTCTGAGGACCTGTTGCCTCTACCGACTGATATGGGTCCTTCTTCCTGTCATGATGTGATTTTATCCTGCTGGCAAGCTCAACTGAGTAACAATGGCTCTAATCCATCTTTGTTTAGAGCACTCTGTAGTGCATATGGATGGCCATATCTCCGCCTGGGTTTATTGAAGGTGATTAATGATTGTATTGGTTTTGTGGGGCCATTGCTTCTCAATAAACTGATCCAGTTTCTTCAACAAGGTTCAGTGAATGTGGATGGGTATTTACTTGCATTATCCTTGGGGCTCACCTCTATAATTAAATCCTTTTTAGATACACAATATACTTTTCATCTTTCCAAACTGAAGCTGAAGCTGCGATCTAGTATCGTGACTCTAATCTATGAGAAGTGTCTTCGAGTGAACTTAGCAGAGCGTTCAAAATTTACAAATGGAGAAATTCAGACATTTATGTCAGTGGATGCTGACCGAACTGTAAACTTATGTAATAGTTTCCATGATATGTGGAGCCTGCCTCTACAAATTGGAGTGGCTCTCTATCTTTTGTATACTCAAGTCAAATTTGCATTTGTATCTGGATTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATAGCACAATTGATTGCAAGGGCTACTGAGCAGATGATGAAGGAGAAAGATGAAAGGATTCGTAAGACAGGAGAAATTTTGACTTATATTCGCACTTTGAAGATGTATGGATGGGAACTTCTTTTTTCTAGTTGGTTGATGGATACAAGATCTTTGGAAGTCAAACACTTAGCTACTCGAAAGTACTTGGATGCGTGGTGTGTTTTCTTTTGGGCTACAACACCAACACTCTTTTCCCTTTTCACATTTGGACTCTATGCACTGATGGGACATCAACTTGATGCTGCAATGGTTTTCACTTGTCTTGCATTGTTCAACACCCTTATTTCACCACTAAATTCATTCCCTTGGGTAATTAATGGATTGATTGATGCCATCATATCTTCTAGACGGTTGAGTAGGTTTCTCGCTTGTTCTGAACATAAATTTAAAGTGGGAGACACAAATTCCTCTCCATCATCATTCCTAAGTGAACAACCTGATTCTGTTCAACGTTTGGGTGTATTTATCCAAGATGCATGTTGTACTTGGTCAAGTAGTGAGGAACAGGCATTAAATATGGTGTTGAATCATGTGACTCTAAGTGTGTCCCAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCAGGTAAATCATCCCTGTTATATTCAATCCTTGGAGAAATGCAACTTGTTCGTGGCTCTATTTATTCCAATGAATCCATTGCTTATGTACCACAGCAGGTCCCTTGGATTTTATCTGGAACGGTGCGCGACAACATATTATTCGGGAAAAGTTATGATCCTGAAAGGTATACTGATACACTGAAGGCATGTGCATTAGATGTTGATGTCTCATTGATGATTGGAGGTGACATGGCTTATATTGGAGAGAAAGGAGTCAACTTATCAGGTGGACAGAGAGCTCGTCTTGCCTTGGCAAGGGCATTGTATCATGACTCAGCTGTTGTTATGCTTGATGATGTCCTGAGTGCAGTAGATGTACAAGTTGCTCAATGTATCTTATACAATGCCCTTCTAGGCCCCCTTATGCAGAGAAAAACCCGATTGCTCTGTACCCACAATATTCAGGCAATATCTTCTGCTGACAAGATTGTTGTAATGGACAAGGGACGCATAAAGTGGATAGGAAATTCAGATGACTTTCCAATTAATTCATGTACACAATTCTCTCCGCTGAATGAAATTGATTCAGCTTTACAGAATCATGGAGAATCTTGCAGCCCAAATCTTTCTTCCAAATCCGAGGAGCAGTCTCTTCTTGGCACAGGTATTGTGCGTGCTCTGGAGGGAGCAGAGGAGATCGTTGAAGTTGAGCTGAGGAAAGAGGGAAAAGTTGAAATTGGAGTGTATAAGAATTATGCTGTCTTCACTGGCTGGTTCATGACAGTCATTATATGCCTATCAGCTATTCTGATGCAAGCTTCTCGTAATGGAAACGATTTATGGTTGTCATATTGGGTTGATACAACAACAGAAAGCAGTCAGACAAGATATTCTGTGTCTTTCTATCTGGCTATACTGTGTCTCTTTTGTATTATTAATTCCTTTTTCACATTGGTGAGGGCATTCTCTTTTGCTTTTGGTGGATTACAAGCTGCAACTAAGGTACACAATAAATTGCTCAACAAGCTTATGAATGCGCCTGTCCAATTCTTTGATCAGACCCCTGGTGGGAGAATACTGAACAGGTTATCTTCAGATCTTTATACCATTGATGATTCACTTCCATTCATTCTAAACATTCTCCTAGCGAATTTCGTAGGCCTGTTGGGTATTACAATAATTTTGTGTTACGTACAGGTCTTCTTCTTACTCTTGCTATTGCCATTTTGGTATATCTACAGTAGACTTCAGTTCTTCTACAGGTCAACATCGAGAGAATTACGACGACTGGATAGTGTTTCACGTTCTCCAATATACTCATCATTCACTGAAACACTTGATGGATCATCAACTATTAGGGCGTTTAAATCTGAGGACTTTTTCTTTACCAAATTCACTGAACATGTAACCTTGTATCAGAAGACTTCCTACACAGAGATAGTAGCAAGTTTGTGGCTTTCCTTGCGTCTTCAGTTATTAGGTGCATTTATCATCTCTTTCATAGCTGTGATGGCTGTTATTGGATCTCGTGGCAGTCTGCCCATCAACTTTGGTACCCCAGGACTGGTAGGATTGGCCCTCTCATATGCAGCTCCAATTGTGTCCTTATTGGGAAGTTTTTTGTCAAGCTTCACTGAAACAGAAAAGGAGATGGTTTCAGTTGAAAGAACTCTTCAATACATGGACATTCCTCAAGAAGAACAAACCGGAGGCCTATACTTGAATCCAGATTGGCCAAATCAAGGATTTATCGAATTTGATTGTGTTACTTTGAAATATATGCCATCTTTGCCAGCTGCACTCTGCAATCTTAGTTTTAGAATTGCTGGAGGAACCCAAGTTGGAATAATTGGAAGAACAGGTGCTGGAAAGTCCAGTGTGTTAAATGCTCTTTTCCGTCTTACTCCAATATGTACAGGCTCCATCTCAATTGATGGCGTGGATATTAAAAATATTTCTGTCAGAGAACTACGTACACATTTGGCCATTGTCCCTCAGAGTCCATTTTTGTTCGAAGGATCATTAAGGGATAACCTAGATCCTTTCAAAATGAATGATGACTTAAAAATTTTGAATGCATTGGAAAAGTGCCATGTGAAAGACGAAGTAGAAGCAGCTGGAGGGCTGGACCTTCTTGTAAAGGAAGGAGGGACGTCATTTTCAGTTGGCCAGCGGCAACTTCTTTGCCTTGCCCGTGCACTTTTGAAATCTTCCAAGGTTCTCTGTTTGGATGAATGCACAGCCAATGTAGACCTTCAAACTGCTTCACTGCTGCAAACTACCATATCCGGTGAATGCAAAGGAATGACAGTTCTCACAATTGCTCACCGGATTTCAACTGTTATAAACATGGACAACATTCTGATTCTTGACCATGGGAAACTGGCTGAACAGGGTAACCCACAGGTTCTTCTGAAAGATGAGACCTCCATATTTTCTAGTTTTGTTGGAGCTTCAGCAATGTAG 4410 0.4 MDDFLHLICPNSPFIWDGERFSDCFEDIVLGFGVNIVTAVMVVVLGFSQKIDRGVRRSDGQMTFPEKIVLDFIPAVGVCLSIVDIFFLWKKEHSSHFVGYHKWFYSCSELMVWINIIFFTKRGSSHHIVFNRVLCFWWIPKAILTVLYLMTKISSLKVSICITESLVVLLNISFGIAINVIRIKRPSYKSSFLEDPLLSNGVDLEEGGYQDLGNDGNFWDLMTFNFITPVMNHGVVKQLDSEDLLPLPTDMGPSSCHDVILSCWQAQLSNNGSNPSLFRALCSAYGWPYLRLGLLKVINDCIGFVGPLLLNKLIQFLQQGSVNVDGYLLALSLGLTSIIKSFLDTQYTFHLSKLKLKLRSSIVTLIYEKCLRVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIAQLIARATEQMMKEKDERIRKTGEILTYIRTLKMYGWELLFSSWLMDTRSLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLYALMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLACSEHKFKVGDTNSSPSSFLSEQPDSVQRLGVFIQDACCTWSSSEEQALNMVLNHVTLSVSQGSFVAVIGEVGSGKSSLLYSILGEMQLVRGSIYSNESIAYVPQQVPWILSGTVRDNILFGKSYDPERYTDTLKACALDVDVSLMIGGDMAYIGEKGVNLSGGQRARLALARALYHDSAVVMLDDVLSAVDVQVAQCILYNALLGPLMQRKTRLLCTHNIQAISSADKIVVMDKGRIKWIGNSDDFPINSCTQFSPLNEIDSALQNHGESCSPNLSSKSEEQSLLGTGIVRALEGAEEIVEVELRKEGKVEIGVYKNYAVFTGWFMTVIICLSAILMQASRNGNDLWLSYWVDTTTESSQTRYSVSFYLAILCLFCIINSFFTLVRAFSFAFGGLQAATKVHNKLLNKLMNAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFILNILLANFVGLLGITIILCYVQVFFLLLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYSSFTETLDGSSTIRAFKSEDFFFTKFTEHVTLYQKTSYTEIVASLWLSLRLQLLGAFIISFIAVMAVIGSRGSLPINFGTPGLVGLALSYAAPIVSLLGSFLSSFTETEKEMVSVERTLQYMDIPQEEQTGGLYLNPDWPNQGFIEFDCVTLKYMPSLPAALCNLSFRIAGGTQVGIIGRTGAGKSSVLNALFRLTPICTGSISIDGVDIKNISVRELRTHLAIVPQSPFLFEGSLRDNLDPFKMNDDLKILNALEKCHVKDEVEAAGGLDLLVKEGGTSFSVGQRQLLCLARALLKSSKVLCLDECTANVDLQTASLLQTTISGECKGMTVLTIAHRISTVINMDNILILDHGKLAEQGNPQVLLKDETSIFSSFVGASAM 1469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03988 1469 FunFam ABC transporter C family member 13 596 851 - -
Viun5g03988 1469 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 217 1466 - -
Viun5g03988 1469 ProSitePatterns ABC transporters family signature. 1368 1382 IPR017871 GO:0005524|GO:0016887
Viun5g03988 1469 FunFam Multidrug resistance-associated protein ABC domain protein 268 586 - -
Viun5g03988 1469 Pfam ABC transporter 634 767 IPR003439 GO:0005524
Viun5g03988 1469 Gene3D - 603 845 IPR027417 -
Viun5g03988 1469 ProSitePatterns ABC transporters family signature. 742 756 IPR017871 GO:0005524|GO:0016887
Viun5g03988 1469 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 613 841 IPR003439 GO:0005524
Viun5g03988 1469 FunFam ATP-binding cassette (ABC) transporter, putative 1219 1466 - -
Viun5g03988 1469 Gene3D ABC transporter type 1, transmembrane domain 877 1216 IPR036640 GO:0005524|GO:0016020
Viun5g03988 1469 CDD ABC_6TM_MRP7_D1_like 292 577 - -
Viun5g03988 1469 CDD ABCC_MRP_domain1 615 818 - -
Viun5g03988 1469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 629 828 IPR027417 -
Viun5g03988 1469 Pfam ABC transporter 1250 1396 IPR003439 GO:0005524
Viun5g03988 1469 SUPERFAMILY ABC transporter transmembrane region 278 577 IPR036640 GO:0005524|GO:0016020
Viun5g03988 1469 Pfam ABC transporter transmembrane region 293 557 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g03988 1469 Pfam ABC transporter transmembrane region 910 1157 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g03988 1469 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 910 1197 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g03988 1469 SUPERFAMILY ABC transporter transmembrane region 906 1214 IPR036640 GO:0005524|GO:0016020
Viun5g03988 1469 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 294 569 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g03988 1469 SMART AAA_5 1258 1436 IPR003593 GO:0016887
Viun5g03988 1469 SMART AAA_5 643 818 IPR003593 GO:0016887
Viun5g03988 1469 CDD ABC_6TM_MRP7_D2_like 909 1209 - -
Viun5g03988 1469 CDD ABCC_MRP_domain2 1230 1449 - -
Viun5g03988 1469 FunFam ABC transporter C family member 5 874 1215 - -
Viun5g03988 1469 Gene3D - 1219 1466 IPR027417 -
Viun5g03988 1469 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1232 1465 IPR003439 GO:0005524
Viun5g03988 1469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1226 1456 IPR027417 -
Viun5g03988 1469 Gene3D ABC transporter type 1, transmembrane domain 278 584 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03988 Viun-Chr5 47727124 47742167 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03988 633 828 Calmodulin-binding Proteins AT2G36910 29.524 7.19e-18 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03988 K05674 - gmx:100814181 2618.96