Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03983 ATGGAGACACAGGGAGCACAGACACACCATTTCAGAAACTCAACAGAATCGGAAAACAATTACAGTAACAATAATCATCACAACAATGTTAACTATAATCGTAACTTGATGGTGAAGACTGAGTTGTGCAGGAGATTCAGGAGAGGCGTGTGCGGTCACGGAAGCAAATGCGATTTCGCGCACAGCGTTGCAGAGCTCCGACGCCAACCCAAACTATGCAGATTGTTCCTTCAAAACAAACACTGTCCCTACGGACGCACCTGTCGCTACCTGCATTCAGCCACACCAACGCCGCCACCGCTACCACCACAACCATCAACTTTTCAAATTCCAAATCTAAAATCTCAGTCAGAAGTAGGACAATTTGATCGCTCCTCTTCTGCAGAATACAAGAGAATGAGAACTTCTGCAGCTGCTCTAAGTGATAGGTACCCTTCTTATGCAGAAAGTAGGACAATGCAAACTGATGATACTGATATTGCTACTGCAGATGCCTCAACTAGCACTGGGGTAGCTAGCCCTTCCCATAAGAATCAACCATATGCTGTGAAGTTCGTATTCAAGAAAAACGAACTAAAAAAGATCAATCGCATTTATGCTGATTGGATTTCAGATTTACCCCGCTGA 627 0.4434 METQGAQTHHFRNSTESENNYSNNNHHNNVNYNRNLMVKTELCRRFRRGVCGHGSKCDFAHSVAELRRQPKLCRLFLQNKHCPYGRTCRYLHSATPTPPPLPPQPSTFQIPNLKSQSEVGQFDRSSSAEYKRMRTSAAALSDRYPSYAESRTMQTDDTDIATADASTSTGVASPSHKNQPYAVKFVFKKNELKKINRIYADWISDLPR 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03983 208 ProSiteProfiles Zinc finger C3H1-type profile. 37 64 IPR000571 GO:0046872
Viun5g03983 208 Gene3D - 70 95 - -
Viun5g03983 208 Gene3D - 31 69 - -
Viun5g03983 208 SMART c3hfinal6 37 63 IPR000571 GO:0046872
Viun5g03983 208 SMART c3hfinal6 67 94 IPR000571 GO:0046872
Viun5g03983 208 PANTHER CCCH ZINC FINGER/TIS11-RELATED 32 159 IPR045877 GO:0003729
Viun5g03983 208 SUPERFAMILY CCCH zinc finger 36 68 IPR036855 GO:0046872
Viun5g03983 208 MobiDBLite consensus disorder prediction 111 130 - -
Viun5g03983 208 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 39 62 IPR000571 GO:0046872
Viun5g03983 208 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 71 93 IPR000571 GO:0046872
Viun5g03983 208 ProSiteProfiles Zinc finger C3H1-type profile. 67 95 IPR000571 GO:0046872
Viun5g03983 208 MobiDBLite consensus disorder prediction 1 30 - -
Viun5g03983 208 SUPERFAMILY CCCH zinc finger 68 95 IPR036855 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03983 32 95 C3H Transcription Factor Family AT1G68200 41.667 5.92e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun5g03983 zf-CCCH 8.8e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03983 - - vun:114185879 367.081