Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03964 ATGAGTGGGAAGAGTTGGTTGAGTGGCATGCATGAGCACCTTAAATTGGCGAGAGAATACGCGGCGGAAGGACTCTACGACACCTCTATCATCTTCTTCGACGGCGCCGTTGCCCGAATCGGCGACCACCTCAACTCCGTCGACGACCCTTTAGTGAGAGCGAAATGGATGAACGTGAAGAAAGCGCTGGGCGATGAAACCCAAGTGGTGAAACAACTAGACGCGGAGAAAAGGGCGTTTAAGGAAACTCGACCACGATCACGATCACGATCATATTCCTCCTCGTCCTTTGTTTTTCAACCGTCGGATGAGTATCCCATTCCCACTACCTCTCCTCGCGCTTCCACCGTCGACGAACACGACCCCGACGTCTGGAGACCGCCGAGTCGAGATTCCAGAAGGCCCGCCATGCCCACTGCCCGAAAGGACGGGGCTTGGAGCCGAGGCTCTACCAGGCCCGCTGCTGGTGCGGTAAAGCCCAGCAGGGTAAGCGCTGGGCCCCGACCACCGGCGAATGGAAAGAACGGCGGCGGCGGCGGCGGTGCTTCTGGAAAGGGGAGCAGAACAGGTGATGGTTCACGTTCAGTTAATGAAGATGGGAAGAAGTCAAAAAAGTATGAATATGAAGGTCCTGATCCTGAGTTAGCGGAAATGTTGGAAAGGGATGTGTTAGAAAGATCTCCTGGTGTGAGATGGGACGATGTTGCAGGCCTCACTCAAGCAAAAACCCTTCTAGAAGAAGCCCTTGTACTTCCCTTGTGGATTCCTGAATATTTTCAGGGAATAAGGAGACCCTGGAAAGGTGTTCTTATGTTTGGGCCTCCAGGAACTGGGAAAACTCTTCTTGCTAAAGCAGTTGCTACTGAATGTGGTACCACTTTCTTTAACGTTTCTTCTGCCACTTTGGCTTCTAAATGGCGTGGAGAGAGCGAGCGCATGGTGCGTTGCTTGTTTGATCTTGCAAGAGCACATGCACCCAGCACCATTTTCATTGATGAGATTGATTCTCTATGCAATGCTAGGGGGGCTTCTGGGGAGCATGAATCATCCAGAAGGGTGAAGTCAGAACTTCTAGTTCAGGTTGATGGTGTGAACAATAGCTCCAAAAATGAAGATGGAACTCGTAAGATAGTAATGGTTTTGGCAGCCACTAACTTTCCATGGGACATAGATGAGGCACTGAGAAGAAGGTTGGAAAAGCGTATATACATTCCTCTCCCAAATTTGGAGAGTCGAAAAGAGCTGATCCGTATCAATCTGAGGACTGTAGAGGTGGCACCTGATGTGAACATAGATGAAGTGGCGAAGAGGACAGAAGGGTACAGTGGAGATGATTTGACAAATGTGTGCCGTGATGCTTCCCTGAATGGTATGAGGCGTAAGATAGCAGGAAAAACGCGTGATGAGATCAAGAAGATGTCGAAGGATGAGATTTGGAAGGACCCTGTTGCAATGTGTGATTTTACAGAAGCTTTGAAGAAAGTTCAACCAAGTGTTTCTCAGGCTGATATTGAACGCCATCAAAAGTGGTTTTCCGAATTTGGATCAGCCTAA 1554 0.4949 MSGKSWLSGMHEHLKLAREYAAEGLYDTSIIFFDGAVARIGDHLNSVDDPLVRAKWMNVKKALGDETQVVKQLDAEKRAFKETRPRSRSRSYSSSSFVFQPSDEYPIPTTSPRASTVDEHDPDVWRPPSRDSRRPAMPTARKDGAWSRGSTRPAAGAVKPSRVSAGPRPPANGKNGGGGGGASGKGSRTGDGSRSVNEDGKKSKKYEYEGPDPELAEMLERDVLERSPGVRWDDVAGLTQAKTLLEEALVLPLWIPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAHAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSKNEDGTRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNLESRKELIRINLRTVEVAPDVNIDEVAKRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKKMSKDEIWKDPVAMCDFTEALKKVQPSVSQADIERHQKWFSEFGSA 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03964 517 Pfam ATPase family associated with various cellular activities (AAA) 269 406 IPR003959 GO:0005524|GO:0016887
Viun5g03964 517 SMART AAA_5 265 408 IPR003593 GO:0016887
Viun5g03964 517 MobiDBLite consensus disorder prediction 89 115 - -
Viun5g03964 517 Gene3D - 227 507 IPR027417 -
Viun5g03964 517 MobiDBLite consensus disorder prediction 80 214 - -
Viun5g03964 517 FunFam Katanin p60 ATPase-containing subunit A1 227 417 - -
Viun5g03964 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 513 IPR027417 -
Viun5g03964 517 CDD Kp60-NTD 8 76 - -
Viun5g03964 517 FunFam Katanin p60 ATPase-containing subunit A1 5 81 - -
Viun5g03964 517 FunFam Katanin p60 ATPase-containing subunit A1 407 493 - -
Viun5g03964 517 Pfam AAA+ lid domain 428 470 IPR041569 -
Viun5g03964 517 PANTHER AAA DOMAIN-CONTAINING 86 516 - -
Viun5g03964 517 Gene3D - 6 81 - -
Viun5g03964 517 ProSitePatterns AAA-protein family signature. 378 397 IPR003960 GO:0005524|GO:0016887
Viun5g03964 517 MobiDBLite consensus disorder prediction 116 138 - -
Viun5g03964 517 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 8 517 IPR028596 GO:0008017|GO:0008568|GO:0051013
Viun5g03964 517 MobiDBLite consensus disorder prediction 192 214 - -
Viun5g03964 517 Gene3D - 407 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03964 Viun-Chr5 47541630 47544841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03964 221 462 Calmodulin-binding Proteins AT3G56690 42.683 3.15e-50 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03964 K07767 - gmx:100801219 765.763