Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03960 ATGTGGTCACAATCACAGAGCGGTACCCACTCGTCGGAATCCGACGCCGTTGATTGTTGTAACTTGAAGGAGACGGAGCTCACGCTGGGACTTCCCGGCACCAAACGTTCCTTCTCCGACACCGTTGATCTTCTTCATCTCGCCACTTCGCTAAATAAAACCAAACTCCCAACACCCAAGGAACAAGTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGAAAGAATGCGATGAAGAGTTGCAAGTTCGTGAAGGTGGCTGTGGATGGAGCTCCTTATCTGAGAAAAGTGGATCTTGAATTGTACGACAGTTACGAACATTTGATGACAGAATTAGAGACCATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGAGTCTGGAAATGGGATTGAATACATGCCCACCTACGAGGACAAGGATGGTGATTGGATGTTGGTCGGGGATGTACCATGGAAGATGTTTGTTGAATCATGCAAGAGGATGAGGCTTATGATTAGCTCAGAGGCTATTGGCCTAGGTCCGAGATCGAGTTCAAAATGTTCGGGTTCCACCTAG 576 0.4826 MWSQSQSGTHSSESDAVDCCNLKETELTLGLPGTKRSFSDTVDLLHLATSLNKTKLPTPKEQVVGWPPVRASRKNAMKSCKFVKVAVDGAPYLRKVDLELYDSYEHLMTELETMFCGLAIRNHLMNERKLMESGNGIEYMPTYEDKDGDWMLVGDVPWKMFVESCKRMRLMISSEAIGLGPRSSSKCSGST 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03960 191 SUPERFAMILY CAD & PB1 domains 72 172 - -
Viun5g03960 191 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 21 178 IPR003311 GO:0005634|GO:0006355
Viun5g03960 191 ProSiteProfiles PB1 domain profile. 80 175 IPR000270 GO:0005515
Viun5g03960 191 FunFam Auxin-responsive protein 75 183 - -
Viun5g03960 191 Pfam AUX/IAA family 26 182 IPR033389 -
Viun5g03960 191 Gene3D - 74 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03960 Viun-Chr5 47523322 47524976 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03960 67 176 B3 DNA Binding Superfamily AT3G61830 31.818 9.60e-09 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun5g03960 AUX_IAA 2.5e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03960 K14484 - gmx:100500488 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03960 5 47523322 47524976 Viun5g03960 5 47523322 47524976 ECH