Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03959 ATGGACAAACAAGATCTCGGCCTTGAAATCACCGAGCTCCGGTTGGGCCTTCCCGGCGCCGCCGCTGGGGACAACAACCACGACAAGGACAACACCAAGAAGAACAACAAGAGGCTCTTCTCCGACATCGACGGTCGAAACAGCTCCTCCGAAGAAGATGCCAAAAAAGAAACCAAGAATCATCAAGTCGTTGGGTGGCCTCCGGTCTGCTCCTACCGGAAGAAGAACACCGTCAATGAACCTAAAATCTACGTCAAAGTCAGCATGGACGGTGCTCCTTTCTTGCGTAAAATTGATTTGGCTATGCACAAGGGATACTCCGACTTGGCCTTCGCCTTGGACAAGTTCTTCGGTTCCTATGGAATCGGCGAAGCGTTGAAGGATGCGGAGAATGCTGAACACGTTCCCATATACGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTTCCTTGGGAGATGTTTAGGGAGTCATGCAAGAGATTGAGGATTATGAAGAGATCAGATGCAAAGGGGTTCGATCTGCAGCCAAAAGGGTCTTTAAAGGGATTCATAGAAGGCGTGAGAAAATGA 576 0.4965 MDKQDLGLEITELRLGLPGAAAGDNNHDKDNTKKNNKRLFSDIDGRNSSSEEDAKKETKNHQVVGWPPVCSYRKKNTVNEPKIYVKVSMDGAPFLRKIDLAMHKGYSDLAFALDKFFGSYGIGEALKDAENAEHVPIYEDKDGDWMLVGDVPWEMFRESCKRLRIMKRSDAKGFDLQPKGSLKGFIEGVRK 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03959 191 MobiDBLite consensus disorder prediction 26 60 - -
Viun5g03959 191 Gene3D - 76 179 - -
Viun5g03959 191 FunFam Auxin-responsive protein 77 178 - -
Viun5g03959 191 SUPERFAMILY CAD & PB1 domains 76 167 - -
Viun5g03959 191 MobiDBLite consensus disorder prediction 17 60 - -
Viun5g03959 191 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 171 IPR003311 GO:0005634|GO:0006355
Viun5g03959 191 Pfam AUX/IAA family 46 174 IPR033389 -
Viun5g03959 191 ProSiteProfiles PB1 domain profile. 82 170 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03959 Viun-Chr5 47512248 47514793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03959 86 189 B3 DNA Binding Superfamily AT4G23980 34.615 1.33e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun5g03959 AUX_IAA 7.5e-43 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03959 K14484 - gmx:100811879 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03959 5 47512248 47514793 Viun5g03959 5 47512248 47514793 ECH
Viun10g02696 10 40237833 40242125 Viun5g03959 5 47512248 47514793 PCT