Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03958 ATGGATGTTACTTCTCTGGGTTCAAATAGCAATACCCAAACCGACCAGCACCCTTTGCTGATGGAGCAACCGGAAAATCATAATGGTCGTCAGCACGTAATTGACATTACTATGAATGGTGAAGCTCTAACTATGTCTTCCCATATTGATCAACACTCTGAAATGCATTTACCGCACAATGGTGATCAACCAGCTGGGGACACACAAGATTCCACTCATCAAGCATCTTCATCTTCTGCATCCAGATTAAACTCTAGGAATTCAGCTTCACTAAGAAGAGGTGAAGGATATGGTCATCGTGGTCGGAGTCCATTGAATTCTGGACTTTGGATTTCTGTTGAGCTTTTTGTCACTGTGAGTCAGATCATAGCATCAATAGTCGTTCTGTCGCTGTCCAGGAATGAAAATCCCCAGGCTCCATTATTTGCATGGGTTGTGGGTTATGCATCTGGTTGTGTTGCCACACTTCCCATTCTATATTGGCGTTTTCGAAACCGTAATCAAAGCAATGAACAAGATTCCTCTCAACCATCTCAAGGATCTTCTGGAAGCAACCCTCCAGATCGTACCTATACTGCCATCTATGTTTCTCATGTCTCAGACGAGGAGAACGGTAATGCTACACAATCAGCCACGAGAAACACTATAATTCCTGGAGCCTTTACTTCTAGGCTTAATGGATTGGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTTGTTGGAAATGTTTGGATCTTTGGAGGTCACACTTCTCCTTCTGATGCTCCACAATTATATAGGTTATGTATTGTTTTTCTTACCTTTAGCTGTATCGGATATGCAATGCCATTTATACTCTGTGCAACTATATGTTGTTGCCTGCCTTGTATAATTTCTGTTTTGGGCATTCGGGAGGATTTTTCTCATAATAGAGGAGCAACAGTGGAATCAATTAATGCTCTACCAATCTTCAAGTTCAAATTGAAGAACAATGAAAACGTTGGTGATCAGGATGCCAATGCAGTTATGGATGAAGGTGGAATTTTGGCTGCGGGAACAGAAAAAGAGCGAGCTATTTCAGGAGAAGACGCTGTTTGTTGCATTTGCTTAGCAAAATACGCAGATGATGATGAGCTTAGAGAGTTACCTTGCTCTCACGTTTTTCATGTGGTGTGTGTTGACAAATGGTTAAAGATAAATGCATCATGCCCTCTTTGTAAAACAGAAGTTGGTACGAATAATGGAGAGTCACCTTCAGCCTGGGAATCAAGTACTCATTAG 1278 0.4163 MDVTSLGSNSNTQTDQHPLLMEQPENHNGRQHVIDITMNGEALTMSSHIDQHSEMHLPHNGDQPAGDTQDSTHQASSSSASRLNSRNSASLRRGEGYGHRGRSPLNSGLWISVELFVTVSQIIASIVVLSLSRNENPQAPLFAWVVGYASGCVATLPILYWRFRNRNQSNEQDSSQPSQGSSGSNPPDRTYTAIYVSHVSDEENGNATQSATRNTIIPGAFTSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSHNRGATVESINALPIFKFKLKNNENVGDQDANAVMDEGGILAAGTEKERAISGEDAVCCICLAKYADDDELRELPCSHVFHVVCVDKWLKINASCPLCKTEVGTNNGESPSAWESSTH 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03958 425 ProSiteProfiles Zinc finger RING-type profile. 365 406 IPR001841 -
Viun5g03958 425 MobiDBLite consensus disorder prediction 1 21 - -
Viun5g03958 425 SMART ringv_2 364 406 IPR011016 GO:0008270
Viun5g03958 425 SMART ring_2 365 405 IPR001841 -
Viun5g03958 425 MobiDBLite consensus disorder prediction 53 99 - -
Viun5g03958 425 MobiDBLite consensus disorder prediction 64 91 - -
Viun5g03958 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 414 IPR013083 -
Viun5g03958 425 FunFam E3 ubiquitin-protein ligase 348 415 - -
Viun5g03958 425 Pfam Ring finger domain 365 406 IPR001841 -
Viun5g03958 425 MobiDBLite consensus disorder prediction 1 25 - -
Viun5g03958 425 SUPERFAMILY RING/U-box 358 412 - -
Viun5g03958 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03958 Viun-Chr5 47498234 47502533 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03958 1 416 C3H Transcription Factor Family AT1G80400 57.857 3.20e-172 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03958 - - gmx:100819729 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03958 5 47498234 47502533 Viun5g03958 5 47498234 47502533 ECH