Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03940 ATGGGTGTGAACTCGAACAGAGTGGAACACTTTGATAACCGCGAAGCCACCACCCTCAGAATCCAAACCCAGACACCGTTGGAAATCCATGCAGTGCAATTACCACCGCAACGAACCACACTGCACAAACTCCGACACAGAGTCTCCGAAATCTTCTTCCCCGACGACCCTCTCCACCGCTTCAAGAACCAAACCTCTTTCAGAAAGTTTATCCTCGCACTTCAGTATCTCTTCCCCATTTTCCAGTGGGCCCCGAACTACAACCTCACCCTCCTCCGCTCCGATCTCATCTCCGGCCTCACCATTGCCAGCCTCGCCATTCCTCAGGGGATCAGTTATGCCAAGCTTGCAAACTTGCCACCCATTATTGGACTATACTCAAGCTTTGTGCCTCCATTGATATACTCGCTGCTAGGAAGTTCTAAACATCTCGGAGTGGGACCTGTTTCGATCGCGTCTTTGGTTATGGGATCAATGTTAAGCGAGAAAGTTTCTTACTCACAAGACCCTTCTCTGTATCTTGGACTGGCTTTCACTGCCACTTTCTTCGCTGGTGTGTTCCAAGCTTCTCTGGGTATACTCAGGTTAGGGTTCGTGATTGATTTTCTGTCGAAGGCGACACTGGTTGGATTCACAGGCGGTGCTGCAATTATCGTGTCACTGCAGCAGTTGAAAGGTTTACTTGGAATAGTGCACTTTACCAGCAAGATGCAAATAGTTCCTGTCATGGTCTCTGTTTTCAAACAAAGACATGAGTGGTCATGGCAAACCATTCTTTTGGGATTCGGTTTCTTGGCATTCCTGATGACCACAAGGCACATTAGCTTGAGGAAACCAAAACTCTTCTGGGTTTCAGCCGCTGCACCATTGACATCAGTTATTATGTCAACCATTTTAGTCTTTCTTCTGAGAGATAAGACTCATCAGATTTCAATTATTGGACACTTACCAAAGGGAGTTAATCCACCTTCATCAAACATGTTATACTTCAGTGGTCCTTACTTGGCTCTTGCTATCAAAACTGGCATTATCACTGGGATCTTATCTCTAACTGAAGGAATTGCAGTAGGTAGAACATTTGCATCACTTAAGAACTACCAGGTGGATGGAAACAAAGAAATGATGGCTATTGGTCTAATGAATGTGGCTGGCTCTTGTTCTTCATGTTATGTCACAACAGGATCTTTTTCTAGATCCGCTGTTAACTACAATGCCGGAGCACAGACAACAGTTTCAAATATAATCATGGCTGCAGCTGTTCTAGTTACCCTTCTGTTTCTCATGCCTCTGTTCTACTATACACCAAATGTTGTCTTAGCCGCCATTATCATCACTGCTGTGATTGGACTATTAGATTATCAATCTGCGTATAAACTGTGGAAGGTTGACAAACTTGATTTCTTGGCATGTCTGTGCTCCTTTTTCGGAGTTCTGTTCATTTCAGTCCCTCTAGGCCTTGCTATAGCAGTTGTCATATCAGTCATCAAGATCCTGCTTCATGTCACTCGACCAAACACTTTGGTTCTGGGGAATATACAAGGAACTCAAATATTCCACAACATAAACCAATACAAAGAAGCTTCTAGAGTCCCTTCATTCCTCATTTTGGCTGTTGAGTCTCCAATCTATTTCGCTAACTCAACTTATCTTCAAGAAAGGATACTGAGGTGGGTTCGAGAAGAGGAAGAACATATAAAAGCTAATGATGGAGCTGCATTGAAGTGCATGATTTTAGACATGACAGCTGTCACAGCCATAGACACAAGTGGGCTTGAGACTTTAAGTGAACTTAAAAAGACGCTGGAAAAGAGATCACTTCAGCTTGTGTTGGCAAATCCTGTTGGAAATGTGGCGGAAAAATTGCACAAGTCAAAAGTTTTGGAATCCTTTGGATTAAAAGGAGTCTATCTCACAGTGGGAGAAGCTGTAACTGACATTTCATCGATCTGGAAAGCTCAACCTTGA 1965 0.4372 MGVNSNRVEHFDNREATTLRIQTQTPLEIHAVQLPPQRTTLHKLRHRVSEIFFPDDPLHRFKNQTSFRKFILALQYLFPIFQWAPNYNLTLLRSDLISGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYSLLGSSKHLGVGPVSIASLVMGSMLSEKVSYSQDPSLYLGLAFTATFFAGVFQASLGILRLGFVIDFLSKATLVGFTGGAAIIVSLQQLKGLLGIVHFTSKMQIVPVMVSVFKQRHEWSWQTILLGFGFLAFLMTTRHISLRKPKLFWVSAAAPLTSVIMSTILVFLLRDKTHQISIIGHLPKGVNPPSSNMLYFSGPYLALAIKTGIITGILSLTEGIAVGRTFASLKNYQVDGNKEMMAIGLMNVAGSCSSCYVTTGSFSRSAVNYNAGAQTTVSNIIMAAAVLVTLLFLMPLFYYTPNVVLAAIIITAVIGLLDYQSAYKLWKVDKLDFLACLCSFFGVLFISVPLGLAIAVVISVIKILLHVTRPNTLVLGNIQGTQIFHNINQYKEASRVPSFLILAVESPIYFANSTYLQERILRWVREEEEHIKANDGAALKCMILDMTAVTAIDTSGLETLSELKKTLEKRSLQLVLANPVGNVAEKLHKSKVLESFGLKGVYLTVGEAVTDISSIWKAQP 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03940 654 ProSiteProfiles STAS domain profile. 523 646 IPR002645 -
Viun5g03940 654 FunFam Sulfate transporter 31 503 649 - -
Viun5g03940 654 Pfam Sulfate permease family 92 471 IPR011547 GO:0016020
Viun5g03940 654 ProSitePatterns SLC26A transporters signature. 121 142 IPR018045 GO:0008271|GO:0008272
Viun5g03940 654 Gene3D STAS domain 503 647 IPR036513 -
Viun5g03940 654 NCBIfam sulfate permease 79 642 IPR001902 GO:0016020|GO:0055085
Viun5g03940 654 PANTHER SULFATE TRANSPORTER 41 645 IPR001902 GO:0016020|GO:0055085
Viun5g03940 654 Pfam STAS domain 524 642 IPR002645 -
Viun5g03940 654 SUPERFAMILY SpoIIaa-like 528 644 IPR036513 -
Viun5g03940 654 CDD STAS_SulP_like_sulfate_transporter 524 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03940 Viun-Chr5 47402409 47407275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03940 1 654 Inorganic Solute Cotransporters AT3G15990 76.524 0.0 1039
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03940 K17471 - gmx:100812617 1170.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03940 5 47402409 47407275 Viun5g03940 5 47402409 47407275 ECH
Viun5g03940 5 47402409 47407275 Viun10g02688 10 40151635 40156185 PCT