Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03937 ATGGATGGCATTGAGGATGATGCGAGCTATGACCCTAACCCATATCGCGTCATCAGTCACCAACGAGGTTATGGTTATCAGAATTCTCCATATACCCTCCCGGTCAATACTGAATATGCCCATCATCATGATGAAGATGAAGAAGAACAAGAACAGTTAGAAGGAGATTATGAGGTTGATCAAAGTAACAGCCTTCAGCTTCCCCAAAAGGATGGGGATGAAGAAAATGGCATGGATGGGGTTGGTGATGAAAATGATGATGAGGAAGAGGAGGTAGAGGATAATAAGCAGATTGGTTATTATGCCACTAAGAGCGAAGAAGATTTGGAGTGGCACCCAAAGAAGCAAAAGCTGAAGACTTTGATTTCAACCTATGAATTTGCTCCTTGTGTGCCAGCACCATCAGCTACAGCTCCAGTTCCAGTTCCCTCAGCTCCCAAACCATCTTCTGGGGGTAGGAATTCACTTACTGACTGGACTGAGCATGAGACATTTGTTCTGCTTGATGCATGGGGTGATAGGTTTCTTCAACTTGGAAGGAAGAGTCTTCGAGGTGAGGAATGGCAGCAAGTGTCGAAAATGGTAGCACAAGTTTCAAAAATTGAAAGGACGGATACTCAGTGTAGAAACCGCCTTGACACACTGAAGAAAAAATACAAGAAGGAGAAGGCTAAATTTCAAGACAGTGATGGTGGAGATTGCAAATGGGTTTATTTTAAGAGGATGGATGAGCTAATGAGTTCACCCCCACAACAAGTTGGTATCTCTTGTGGTTTGGACTCGGGAGATTATGTTTTTATGAACCCTGGAGTTTATTTGAATCAAGGTAATGGATTGGATGAACTGAGGGATAGTCCTGAGAATGTGGAATCTACCGGTGAAGAAGGTTCAGATGGACTTCAACTTCAAGCAAAGAAAAGGAAAGGAAGGAGCAGTGGTGAAGCCTCTTCCTTCAGGTTGCTTGCCGATTCCATACAAAAGTTCAGTAAGATATATGAAAAGATAGAGAATAGTAAAAGGCAGCAGATGATGGAACTGGAAAAGATGAGAATGGATTTCCATAAGGAATTGGAAACACAGAAGAGGCAGATATTAGGGAATTTGCAGAGTGAGATTTCAAAACTAGAACAGAGACATGATGAGAACGAAGATTCTGCTGAGAATGGTATGTGA 1173 0.4237 MDGIEDDASYDPNPYRVISHQRGYGYQNSPYTLPVNTEYAHHHDEDEEEQEQLEGDYEVDQSNSLQLPQKDGDEENGMDGVGDENDDEEEEVEDNKQIGYYATKSEEDLEWHPKKQKLKTLISTYEFAPCVPAPSATAPVPVPSAPKPSSGGRNSLTDWTEHETFVLLDAWGDRFLQLGRKSLRGEEWQQVSKMVAQVSKIERTDTQCRNRLDTLKKKYKKEKAKFQDSDGGDCKWVYFKRMDELMSSPPQQVGISCGLDSGDYVFMNPGVYLNQGNGLDELRDSPENVESTGEEGSDGLQLQAKKRKGRSSGEASSFRLLADSIQKFSKIYEKIENSKRQQMMELEKMRMDFHKELETQKRQILGNLQSEISKLEQRHDENEDSAENGM 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03937 390 FunFam trihelix transcription factor ASIL2 159 221 - -
Viun5g03937 390 MobiDBLite consensus disorder prediction 362 390 - -
Viun5g03937 390 Coils Coil 332 363 - -
Viun5g03937 390 MobiDBLite consensus disorder prediction 277 316 - -
Viun5g03937 390 ProSiteProfiles Myb-like domain profile. 159 216 IPR001005 -
Viun5g03937 390 Coils Coil 365 385 - -
Viun5g03937 390 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 141 381 IPR044823 -
Viun5g03937 390 Gene3D - 159 221 - -
Viun5g03937 390 MobiDBLite consensus disorder prediction 373 390 - -
Viun5g03937 390 Pfam Myb/SANT-like DNA-binding domain 158 245 IPR044822 -
Viun5g03937 390 MobiDBLite consensus disorder prediction 1 105 - -
Viun5g03937 390 MobiDBLite consensus disorder prediction 77 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03937 Viun-Chr5 47393960 47395843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03937 306 388 Trihelix Transcription Factor Family AT3G14180 40.964 2.69e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Viun5g03937 Myb_DNA-bind_4 9.7e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03937 - - gmx:100814194 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03937 5 47393960 47395843 Viun5g03937 5 47393960 47395843 ECH