LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g03917	ATGCATATTAGGTTGGATCGGTTGATTATTACCAACAAAAAGAAAACACAGAAAGAGAACAAGATGAAGAGAAGTGTGCTTCCCTCTCTATTGTTCCTCTTTCTACTTCACCCCTCTGAAGGTGAAGACATTAGCATTTACTGGGGTCAAAATGCCAAAGAGGGAAACCTGACAGAAACGTGTGCAACAGGAAAATACTCCTACGTCAAAATAGCCTTCCTTTCCACCTTTGGGAAGGGCCAAACCCCACAACTGAACCTGGGTGGTCATTGTGACGCATCTTCCAATGGGTGCACTGAGATGGGAAGAGAAATTAGGAACTGTCAAGAGCAAGGGATCAAGGTGATGATTTCTATTGGAGGAGGAAGTGGTGATTACTCTATAACTTCCCTTGAGGATGCTAAGAATGTTTCGGACTACTTGTGGGACAATTTCCTGGGTGGTTCATCCTCATCACGCCCATTTGGGGATGTAGTCTTAGATGGCATTGACTATGGCATTGACTTTGTCATAGCGGCAGGTGAATCATCGTTCCTGGGAAACCTTTCCCTTCTACTCATTTCATATTCCCAGACACGCAAAGTGTACCTGTCAGCAGCTCCTCAGTGTGTATTTCCTGATGCTAAGCTGGATTCAGCCCTTGCTACTGGCCTTTTGGACTATATCTGGATACAGTTCTACAACAATTCTCAATGCGAATACAGCGACAATAATTTCGACAACCTCCTTAAAGCATGGAACCTTTGGTCCATGTCATTGAAGGCAGGGAAAATGTTTCTGGGGTTACCAGCAGATGAAACTGCAGCTGTTAGCGGTTATGTTCCAGTTGATGTATTAGTTTCTAAGATCTTGCCTGCAATAAACAAGACACCAAAGTATGGAGGTGTCATGTTGTGGTCAAGGTACGAGGATAAAACGAGTGGATACAGCTCCTACATTCAAAATTTTCACATAAATCAAACTGAAGAGTCTCTATGCACACAGCAAAGCCTTCCTGCATGCAGGAGCTCTGAAGTTGGTTTTGTCGAAAGTTTTGGTAACATGTCCACCGTTGGCATACAAGTTTATGCCGGCAGCAATGGTACGCAGTGCTGTGAGATCTTATGTAAGAACAATTGTTCGTGTCAAGCATATGCTCCAATAAACCGCAAAAACAATACTGGATGCCTGATATGGCTCAAAGGAACTCAATTCATTAGAGCTTCTTCTGCAGACATAGCACTGCCTATCTATGTTTCTGCTGCACTGCTCCCAGAAGACAAAGTAAACCGGTGGTACATATGGCTCATCGTTGGGGTGGTAGCAGTATTTGCAATACCTGTAATTTTCTCTTTATGGCGTGCCATGTGGAGAAATTACAAAGCTAAAGTGGAGAGAAAGAAGATGCAGGAGAAGTTATTACATGACATTGGGGGTAATTCTAGAAAGAGTAAGAACAAGGGAAAGACAAGCAATGGGGTTGAATTATTCACCTTTGAAACCATTGTTGCTGCAACAGATAATTTCTCAGAGGCCAATAAGCTAGGAAAGGGTGGATTTGGTCCTGTTTATAAGGGAACACTGCGTGATCAGCAAGAAGTAGCAATCAAGCGACTTTCTAAAAGTTCAGGACAAGGGGTAATGGAATTTAAGAACGAAGCCAAACTTATGGCGAAACTCCAACACACTCATCTTGTAAAGCTTCTAGGATTCTGCATCCAGAGAGATGAAAAAATATTGGTTTATGAATACATGCCTAACAAGAGCTTAGACTTCTACCTATTTGATTCAGCTAGAAAGAATTTGCTAGACTGGGAAAAACGGCTGAACATCATTGGAGGCATTGCTCAAGGACTTCTTTATCTGCACAAGTACTCGAGACTAAAGGTGATACATCGAGATCTGAAAGCGGGTAATATATTACTTGATCAGGAGATGAATCCTAAGATATCTGACTTTGGCATGGCTCGAATATTCGGTGTAAGAGCATCAGAAGAAAACACAAACAGAGTTGTTGGTACATATGGATACATGGCCCCAGAGTATGCAATAAACGGTGTTGTGTCCATCAAAATAGATGTATTCAGCTTTGGTGTGCTGCTGCTAGAAATACTTAGTGGCAAGAAAAATAACAGTAGTTACGACTCCGATCGTCCACTCAACCTCATAGGATACGCGTGGCAGCTCTGGAAGGAAGGAAGAGCTCTGGGGTTAATAGACACAGATTTGTATGAACTATGTCCTCAGAATGCAGTTTTGAGATGTATTCATATCGGCCTGCTGTGTGTGCAAGATCAAGCAACGGATAGACCGACCATGGAAGACATTGTTTCATTTCTATCCAATGATACAATGCAACTTCCCCAACCAAAGAAACCAGCATTTTTCATCAACGTGGTTGTGGAAGAAGACTCAGAGCTTCCTTACAGCAGACAAGAACTTCATTCCTCAAATGACTTAACAATTTCTAGCATACATGGAAGATAA	2466	0.4225	MHIRLDRLIITNKKKTQKENKMKRSVLPSLLFLFLLHPSEGEDISIYWGQNAKEGNLTETCATGKYSYVKIAFLSTFGKGQTPQLNLGGHCDASSNGCTEMGREIRNCQEQGIKVMISIGGGSGDYSITSLEDAKNVSDYLWDNFLGGSSSSRPFGDVVLDGIDYGIDFVIAAGESSFLGNLSLLLISYSQTRKVYLSAAPQCVFPDAKLDSALATGLLDYIWIQFYNNSQCEYSDNNFDNLLKAWNLWSMSLKAGKMFLGLPADETAAVSGYVPVDVLVSKILPAINKTPKYGGVMLWSRYEDKTSGYSSYIQNFHINQTEESLCTQQSLPACRSSEVGFVESFGNMSTVGIQVYAGSNGTQCCEILCKNNCSCQAYAPINRKNNTGCLIWLKGTQFIRASSADIALPIYVSAALLPEDKVNRWYIWLIVGVVAVFAIPVIFSLWRAMWRNYKAKVERKKMQEKLLHDIGGNSRKSKNKGKTSNGVELFTFETIVAATDNFSEANKLGKGGFGPVYKGTLRDQQEVAIKRLSKSSGQGVMEFKNEAKLMAKLQHTHLVKLLGFCIQRDEKILVYEYMPNKSLDFYLFDSARKNLLDWEKRLNIIGGIAQGLLYLHKYSRLKVIHRDLKAGNILLDQEMNPKISDFGMARIFGVRASEENTNRVVGTYGYMAPEYAINGVVSIKIDVFSFGVLLLEILSGKKNNSSYDSDRPLNLIGYAWQLWKEGRALGLIDTDLYELCPQNAVLRCIHIGLLCVQDQATDRPTMEDIVSFLSNDTMQLPQPKKPAFFINVVVEEDSELPYSRQELHSSNDLTISSIHGR	821

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g03917	821	Gene3D	Glycosidases	43	317	-	-
	Viun5g03917	821	Pfam	PAN-like domain	360	394	IPR003609	-
	Viun5g03917	821	ProSiteProfiles	Protein kinase domain profile.	502	778	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g03917	821	SUPERFAMILY	Protein kinase-like (PK-like)	485	804	IPR011009	-
	Viun5g03917	821	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	623	635	IPR008271	GO:0004672\|GO:0006468
	Viun5g03917	821	CDD	STKc_IRAK	508	773	-	-
	Viun5g03917	821	CDD	GH18_hevamine_XipI_class_III	43	315	IPR045321	-
	Viun5g03917	821	Pfam	Glycosyl hydrolases family 18	45	304	IPR001223	GO:0005975
	Viun5g03917	821	FunFam	Acidic endochitinase SE2	42	317	-	-
	Viun5g03917	821	Gene3D	Transferase(Phosphotransferase) domain 1	578	785	-	-
	Viun5g03917	821	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	42	320	IPR001223	GO:0005975
	Viun5g03917	821	SUPERFAMILY	(Trans)glycosidases	40	313	IPR017853	-
	Viun5g03917	821	Gene3D	Phosphorylase Kinase; domain 1	467	577	-	-
	Viun5g03917	821	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	578	781	-	-
	Viun5g03917	821	Pfam	Protein tyrosine and serine/threonine kinase	505	773	IPR001245	GO:0004672\|GO:0006468
	Viun5g03917	821	SMART	serkin_6	502	773	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g03917	821	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	311	799	-	-
	Viun5g03917	821	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	468	577	-	-
	Viun5g03917	821	Pfam	Domain of unknown function (DUF3403)	775	821	IPR021820	GO:0004674

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g03917	Viun-Chr5	47313537	47317441	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g03917	492	788	Receptor kinase-like Gene Family	AT4G23230	60.269	2.26e-125	388

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun5g03917		PK_Tyr_Ser-Thr	2e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g03917	-		-	gmx:100794508	1146.34