Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03916 ATGGAGTTTTGGCCGGAGTTTCTTGCGAGCAGCACCGGAAAAGAGTTTGTAGCGGGAGGGTTTGGAGGCACTGCCGGAATAATCTCCGGTTACCCGTTAGACACTCTCCGTGTGATGCAGCAGAACTCCTTCAACACTGGCTCCGCCTTCAGCATCCTGAGAAATGTGGTGGCCAATGAAGGACCAACCGCTCTCTACCGCGGCATGGCTGCACCTTTGGCCTCTGTTACCTTTCAGAATGCAATGGTTTTCCAAATTTACGCAATCCTTTCGAGGGCATTCAGTTCGTCCGATTCGGTGAACGATCCTCCTTCTTACAAGGGTGTTGCCTTAGGAGGATTTTGCAGCGGTGCCATACAGAGTATGCTACTATCCCCTGTTGAGTTAGTTAAAATTCGGCTTCAGTTGCAGAACACAGGTCAATCGATAGAAACCCAGAAAGGTCCTATGAAGGTGGCAAAAAACATATGGAAAATAGAGGGTCTTCGTGGCATTTATCGAGGACTTGGGATCACCATGCTAAGAGATGCACCTGCACATGGTCTTTACTTTTGGACATATGAATATGCAAGGGAGAAGCTTCACCCAGGTTGCAGAAGAAGTTGTGAAGAGAGCCTGAACACTATGCTGGTATCAGGAGGATTAGCTGGGGTGGTGAGTTGGGTTTTGAGCTACCCTTTGGATGTGATAAAAACAAGATTGCAGGCTCAAACACTTTCTTCACAGAAATACAGAGGAATTTTGGATTGTCTTAGGAAGAGTGTTAGAGAAGAAGGATATGAGGTGCTATGGAGGGGTTTGGGAACTGCAGTTGCTAGAGCTTTTGTGGTGAACGGTGCTATATTTTCTGCATATGAGATCAGTCTGAGGTGCCTGTTTGAAAAATAA 888 0.4673 MEFWPEFLASSTGKEFVAGGFGGTAGIISGYPLDTLRVMQQNSFNTGSAFSILRNVVANEGPTALYRGMAAPLASVTFQNAMVFQIYAILSRAFSSSDSVNDPPSYKGVALGGFCSGAIQSMLLSPVELVKIRLQLQNTGQSIETQKGPMKVAKNIWKIEGLRGIYRGLGITMLRDAPAHGLYFWTYEYAREKLHPGCRRSCEESLNTMLVSGGLAGVVSWVLSYPLDVIKTRLQAQTLSSQKYRGILDCLRKSVREEGYEVLWRGLGTAVARAFVVNGAIFSAYEISLRCLFEK 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03916 295 Pfam Mitochondrial carrier protein 11 96 IPR018108 -
Viun5g03916 295 Pfam Mitochondrial carrier protein 209 293 IPR018108 -
Viun5g03916 295 Pfam Mitochondrial carrier protein 110 194 IPR018108 -
Viun5g03916 295 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 291 IPR018108 -
Viun5g03916 295 PRINTS Mitochondrial carrier protein signature 119 137 IPR002067 GO:0055085
Viun5g03916 295 PRINTS Mitochondrial carrier protein signature 166 184 IPR002067 GO:0055085
Viun5g03916 295 PRINTS Mitochondrial carrier protein signature 213 235 IPR002067 GO:0055085
Viun5g03916 295 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Viun5g03916 295 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Viun5g03916 295 Gene3D Mitochondrial carrier domain 12 295 IPR023395 -
Viun5g03916 295 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 10 292 - -
Viun5g03916 295 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 193 IPR018108 -
Viun5g03916 295 FunFam Mitochondrial arginine transporter BAC2 11 295 - -
Viun5g03916 295 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 93 IPR018108 -
Viun5g03916 295 SUPERFAMILY Mitochondrial carrier 12 286 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03916 Viun-Chr5 47310562 47313073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03916 1 295 Antiporters AT1G79900 70.508 1.42e-144 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03916 K15109 - gmx:100812034 537.724