Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03898 ATGGGCGCTGACATGTCCAACAATCCACCACCCACTTCTCACGCCAAAGACTTCTTCGCCTCCCCAGCTCTCTCTCTCAGCCTTGCTGGGATTTTTCGCCATGCCGGTGTGGCGGCGGAGGCTGAAGCTGCCACTTCGAACATGGAGGTGGAGGAGTGGGAAGAAGGGAGTGGCGGCGGTGAAAGGCTGGAAGAGATTAGCAGCGAGAATTCGGGTCCCACGAGATCCAGATCAGAGGATGATTTTGAAGGAGAAGGTGAACACGAGGATGCTGATGCTGATGCTGACGGAGACCGAAAGAAGAAGAAGAAGAGAAAGAAATATCACAGGCACACTGCTGATCAGATCAGAGAAATGGAAGCGCTTTTCAAAGAGTCACCACATCCTGATGAAAAGCAGAGGCAACAACTAAGCAAGCAATTAGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAGGCAATACAAGAACGTCACGAAAATTCTTTGTTGAAGTCAGAAATAGAGAAACTTAAGGAGAAAAACAAGACCTTACGAGAGACAATAAACAAAGCTTGTTGCCCCACCTGTGGCGTGCCCACCACAAGCAGAGATGGAGCCATGCCAACCGAAGAACAACAACTACGTATTGAGAATGCCAAACTCAAAGCCGAGGTAGAGAAGCTTCGAGCAGCTCTAGGGAAATACGCACCCGGGTCAACGTCCCCTTCGTGTTCTTCTGGCCATGACCAAGAGAATAGAAGCTCTTTGGATTTTTACACTGGAATTTTCGGAATCGACAATTCAAGGATAATGGATATAGTGAACCAAGCCATGGAGGAACTGATTAAGATGGCTACCATGGGAGAACCATTATGGCTACGTAGCTTCGAGACTGGTCGCGAAATACTTAACTACGACGAATACGTGAAGGAGTTTGCAGTTGAAAATTCAAGCAGTGGAAAGCCAAAGAGATCCATTGAAGCCTCAAGAGACACTGGAGTTGTTTTTGTGGATCTTCCTCGGCTTGTCCAAAGTTTTCTAGATGTGAATCAATGGAAGGAAATGTTTCCATGTTTGATATCTAAGGCTGCAACAGTTGATGTTATATGCAATGGAGAAGGTCCTAACAGGAATGGTGCAGTGCAACTGATGTTTGCTGAGCTGCAAATGCTCACTCCAATGGTGCCCACAAGAGAAGTCTATTTTGTCCGTTTCTGCAAACAGTTGAGTGCTGAACAATGGGCAATCGTTGATGTATCCATAGACAAAGTAGAAGACAACATTGACGCGTCCCTCGTGAAATGCAGAAAACGCCCTTCTGGTTGCATTATTGAGGACAAGTCCAATGGCCACTGCAAAGTAATATGGGTGGAGCACTTGGAATGCCAGAAGAGTGCAGTTCACTCCTTGTATCGTACCATTGTGAACAGTGGCCTAGCCTTTGGAGCAAAGCATTGGATTACGACTCTTCAACTTCAATGTGAGCGTCTGGTTTTTTTCATGGCAACTAATGTTCCCATGAAGGATTCAACCGGTGTTGCCACATTGGCTGGGAGAAAAAGCATTTTGAAGTTGGCACAAAGAATGACATCGAGTTTCTGCCATGCAATTGGCGCGTCGAGCTTCCACACATGGACTAAGGTTACGAGCAAGAACGGGGAAGACATAAGGATAAGTTCTAGAAAGAATTTGAACGATCCTGGTGAACCTCTTGGGTTGATACTGTGCGCTGTTTGTTCTGTATGGTTACCAGTCTCACAAAATGTTCTGTTTGATTTCTTGAGAGATGAAACACGCCGAAATGAGTGGGATATCATGTCAAGTGGTGGGACAGTGCAGTCCATTGCAAATTTATCCAAAGGACAAGACCGAGGCAATGCAGTTACCATTCAAACGATTAAATTGAAAGAAAACAGTGTGTGGATACTACAAGATAGCTGCACAAATCCTTATGAGTCGATGGTGGTATATGCTTCTGTGGACATTACTGGTATTCAGTCTGTGATGACAGGATGTGATTCAAGCAACCTTGCAATACTGCCTTCAGGATTCTCTATAATTCCTGATGGCCTCGAGTCAAGACCATTGGTGATTACTTCAAGGCAGGAAGAAAAATATACCGAAGGAGGATCTTTGTTTACAATGGCATTCCAGATTCTGACTAATTCATCTCCCACAGCGAAGTTAACAGTGGAGTCTGTGGACTCTGTCAACACTCTTGTATCTTGTACGTTGAGAAATATCAGAACGTGCTTACAATGCGAAGAGGGTTAG 2277 0.4528 MGADMSNNPPPTSHAKDFFASPALSLSLAGIFRHAGVAAEAEAATSNMEVEEWEEGSGGGERLEEISSENSGPTRSRSEDDFEGEGEHEDADADADGDRKKKKKRKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKSEIEKLKEKNKTLRETINKACCPTCGVPTTSRDGAMPTEEQQLRIENAKLKAEVEKLRAALGKYAPGSTSPSCSSGHDQENRSSLDFYTGIFGIDNSRIMDIVNQAMEELIKMATMGEPLWLRSFETGREILNYDEYVKEFAVENSSSGKPKRSIEASRDTGVVFVDLPRLVQSFLDVNQWKEMFPCLISKAATVDVICNGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRFCKQLSAEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSAVHSLYRTIVNSGLAFGAKHWITTLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTSSFCHAIGASSFHTWTKVTSKNGEDIRISSRKNLNDPGEPLGLILCAVCSVWLPVSQNVLFDFLRDETRRNEWDIMSSGGTVQSIANLSKGQDRGNAVTIQTIKLKENSVWILQDSCTNPYESMVVYASVDITGIQSVMTGCDSSNLAILPSGFSIIPDGLESRPLVITSRQEEKYTEGGSLFTMAFQILTNSSPTAKLTVESVDSVNTLVSCTLRNIRTCLQCEEG 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03898 758 SUPERFAMILY Homeodomain-like 97 163 IPR009057 -
Viun5g03898 758 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 101 753 IPR042160 -
Viun5g03898 758 CDD START_ArGLABRA2_like 269 496 - -
Viun5g03898 758 ProSitePatterns 'Homeobox' domain signature. 137 160 IPR017970 GO:0000981|GO:0006355
Viun5g03898 758 ProSiteProfiles 'Homeobox' domain profile. 102 162 IPR001356 GO:0003677
Viun5g03898 758 SUPERFAMILY Bet v1-like 519 720 - -
Viun5g03898 758 Pfam START domain 275 497 IPR002913 GO:0008289
Viun5g03898 758 Gene3D - 305 494 IPR023393 -
Viun5g03898 758 ProSiteProfiles START domain profile. 264 500 IPR002913 GO:0008289
Viun5g03898 758 MobiDBLite consensus disorder prediction 39 115 - -
Viun5g03898 758 FunFam Homeobox-leucine zipper protein HDG1 88 178 - -
Viun5g03898 758 SUPERFAMILY Bet v1-like 267 497 - -
Viun5g03898 758 FunFam Homeobox-leucine zipper protein GLABRA 2 273 496 - -
Viun5g03898 758 Coils Coil 212 232 - -
Viun5g03898 758 SMART START_1 273 497 IPR002913 GO:0008289
Viun5g03898 758 SMART HOX_1 104 166 IPR001356 GO:0003677
Viun5g03898 758 Coils Coil 161 191 - -
Viun5g03898 758 Gene3D - 92 175 - -
Viun5g03898 758 Pfam Homeodomain 105 160 IPR001356 GO:0003677
Viun5g03898 758 CDD homeodomain 109 160 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03898 Viun-Chr5 47235974 47241374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03898 66 757 Homeobox Transcription Factor Family AT1G79840 66.097 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun5g03898 START 4.7e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03898 K09338 - gmx:100809926 1330.08