LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g03891	ATGGCGCTGTCATCTATGTTCTATACCAACGTTGTTGTCGTGTCTCGTAAATGCTACAAAACACTGGATTATCCGGAGAAGAAGAGAAACTTGGTTTCATCGATTTTCAGCCGAAAACGTTGGGAAGCTGGGATGTCCAAATTCTTAACACTGCTTCTTATGGAGTTTCTAATAACTTTGATGAAACAAAGCAAGAAAATTCTCAAAGGGGCACTTTGTACGAACATGGGCGTCAAGAATTTCAGCCCGCTGACTCATCTTGGTCACACATGGTGCCTGTTTCTTCTCCCGGCTCTTCTTCTGTCACTACCACCATCAGTGTGTAATAGCACAGCAACACTTAGTGTTTGTAAGAAAGCTAGGGTTCAGTCATCTTCGAGTCAAGCACCTCTCAAGGTTCGGAAGGAGAAGCTAAGTGATAGAATAACAACACTTCACCAACTAGTTTCCCCGTTTGGAAAGACTGACACAGCTTCTGTCTTGTTGGAAGCCATTGGATATATAAGGTTTCTGCAGGGTCAAATTGAGGCACTAAGTTCTCCTTACTTGGACGATGCATCAAAAAACACGACGAATCAACAGTCTGTTGATGGAGAAAGAACCTGTGTTTTTCCAGAGGATCCGGGTCTGCTGTTGAAAGAGAATAATGGCCTGAAAAGAAAAGGAGGTACAAACCAGGAAGCAGAAGATAAAGCAAAGGAGTTGAAGAGTAGAGGGTTATGCTTGGTGCCGGTGTCTTGTACCCAACATGTTGTGACCCAAAATGAGTGGCACGGAAGAGGATTTTAA	789	0.4347	MALSSMFYTNVVVVSRKCYKTLDYPEKKRNLVSSIFSRKRWEAGMSKFLTLLLMEFLITLMKQSKKILKGALCTNMGVKNFSPLTHLGHTWCLFLLPALLLSLPPSVCNSTATLSVCKKARVQSSSSQAPLKVRKEKLSDRITTLHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLDDASKNTTNQQSVDGERTCVFPEDPGLLLKENNGLKRKGGTNQEAEDKAKELKSRGLCLVPVSCTQHVVTQNEWHGRGF	262

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g03891	262	Gene3D	-	129	195	IPR036638	GO:0046983
	Viun5g03891	262	PANTHER	TRANSCRIPTION FACTOR BHLH83-RELATED	117	250	-	-
	Viun5g03891	262	CDD	bHLH_AtbHLH_like	132	179	IPR045239	-
	Viun5g03891	262	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	132	182	IPR036638	GO:0046983
	Viun5g03891	262	Coils	Coil	218	238	-	-
	Viun5g03891	262	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	122	171	IPR011598	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g03891	Viun-Chr5	47186935	47189468	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g03891	106	209	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT4G29100	67.290	3.25e-37	132

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g03891	-		-	vun:114183597	313.153

Showing 1 to 1 of 1 entries