Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03890 ATGCTACAAAACACTGGATTATCCGGAGAAGAAGAGAAACTTGGTTTCATCGATTTTCAGCCGAAAACGTTGGGAAGCTGGGATGTCCAAATTCTTAACACTGCTTCTTATGGAGTTTCTAATAACTTTGATGAAACAAAGCAAGAAAATTCTCAAAGGGGCACTTTGTACGAACATGGGCGTCAAGAATTTCAGCCCGCTGACTCATCTTGGTCACACATGGTGCCTGTTTCTTCTCCCGGCTCTTCTTCTGTCACTACCACCATCAGTGGTAATAACAATATATTGGATTTCACTTATAATAACTCAGATCACAGAAAAAATCTTCTACAAGACCAAATATCCGAGTGTAATAGCACAGCAACACTTAGTGTTTGTAAGAAAGCTAGGGTTCAGTCATCTTCGAGTCAAGCACCTCTCAAGGTTCGGAAGGAGAAGCTAAGTGATAGAATAACAACACTTCACCAACTAGTTTCCCCGTTTGGAAAGACTGACACAGCTTCTGTCTTGTTGGAAGCCATTGGATATATAAGGTTTCTGCAGGGTCAAATTGAGGCACTAAGTTCTCCTTACTTGGACGATGCATCAAAAAACACGACGAATCAACAGTCTGTTGATGGAGAAAGAACCTGTGTTTTTCCAGAGGATCCGGGTCTGCTGTTGAAAGAGAATAATGGCCTGAAAAGAAAAGGAGGTACAAACCAGGAAGCAGAAGATAAAGCAAAGGAGTTGAAGAGTAGAGGGTTATGCTTGGTGCCGGTGTCTTGTACCCAACATGTTGTGACCCAAAATGAGTGGCACGGAAGAGGATTTTAA 816 0.4203 MLQNTGLSGEEEKLGFIDFQPKTLGSWDVQILNTASYGVSNNFDETKQENSQRGTLYEHGRQEFQPADSSWSHMVPVSSPGSSSVTTTISGNNNILDFTYNNSDHRKNLLQDQISECNSTATLSVCKKARVQSSSSQAPLKVRKEKLSDRITTLHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLDDASKNTTNQQSVDGERTCVFPEDPGLLLKENNGLKRKGGTNQEAEDKAKELKSRGLCLVPVSCTQHVVTQNEWHGRGF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03890 271 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 65 259 - -
Viun5g03890 271 Gene3D - 138 204 IPR036638 GO:0046983
Viun5g03890 271 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Viun5g03890 271 CDD bHLH_AtbHLH_like 141 188 IPR045239 -
Viun5g03890 271 Coils Coil 227 247 - -
Viun5g03890 271 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 191 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03890 Viun-Chr5 47186935 47189468 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03890 95 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 59.542 2.14e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03890 - - vun:114183597 518.85