Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03889 ATGATGACAGGGTTTCCTAACTGGTGGAGCATGCATCCACCATCTTTCATCCCTCCCCAATATCTTCTTCCACCTTCTTCATTTTCTTTTAATCTTTTCACCCAAAATCCAGACCCTCCTCTTTCCACTGGATTATCCGGAGAAGAAGAGAAACTTGGTTTCATCGATTTTCAGCCGAAAACGTTGGGAAGCTGGGATGTCCAAATTCTTAACACTGCTTCTTATGGAGTTTCTAATAACTTTGATGAAACAAAGCAAGAAAATTCTCAAAGGGGCACTTTGTACGAACATGGGCGTCAAGAATTTCAGCCCGCTGACTCATCTTGGTCACACATGGTGCCTGTTTCTTCTCCCGGCTCTTCTTCTGTCACTACCACCATCAGTGGTAATAACAATATATTGGATTTCACTTATAATAACTCAGATCACAGAAAAAATCTTCTACAAGACCAAATATCCGAGGTTCGGAAGGAGAAGCTAAGTGATAGAATAACAACACTTCACCAACTAGTTTCCCCGTTTGGAAAGACTGACACAGCTTCTGTCTTGTTGGAAGCCATTGGATATATAAGGTTTCTGCAGGGTCAAATTGAGGCACTAAGTTCTCCTTACTTGGACGATGCATCAAAAAACACGACGAATCAACAGTCTGTTGATGGAGAAAGAACCTGTGTTTTTCCAGAGGATCCGGGTCTGCTGTTGAAAGAGAATAATGGCCTGAAAAGAAAAGGAGGTACAAACCAGGAAGCAGAAGATAAAGCAAAGGAGTTGAAGAGTAGAGGGTTATGCTTGGTGCCGGTGTCTTGTACCCAACATGTTGTGACCCAAAATGAGTGGCACGGAAGAGGATTTTAA 855 0.4234 MMTGFPNWWSMHPPSFIPPQYLLPPSSFSFNLFTQNPDPPLSTGLSGEEEKLGFIDFQPKTLGSWDVQILNTASYGVSNNFDETKQENSQRGTLYEHGRQEFQPADSSWSHMVPVSSPGSSSVTTTISGNNNILDFTYNNSDHRKNLLQDQISEVRKEKLSDRITTLHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLDDASKNTTNQQSVDGERTCVFPEDPGLLLKENNGLKRKGGTNQEAEDKAKELKSRGLCLVPVSCTQHVVTQNEWHGRGF 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03889 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 193 IPR011598 GO:0046983
Viun5g03889 284 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 140 272 - -
Viun5g03889 284 CDD bHLH_AtbHLH_like 155 201 IPR045239 -
Viun5g03889 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 204 IPR036638 GO:0046983
Viun5g03889 284 Gene3D - 149 217 IPR036638 GO:0046983
Viun5g03889 284 Coils Coil 240 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03889 Viun-Chr5 47186682 47189468 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03889 154 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 72.152 2.97e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03889 - - vun:114183597 551.977