Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03886 ATGATGACAGGGTTTCCTAACTGGTGGAGCATGCATCCACCATCTTTCATCCCTCCCCAATATCTTCTTCCACCTTCTTCATTTTCTTTTAATCTTTTCACCCAAAATCCAGACCCTCCTCTTTCCACTGGATTATCCGGAGAAGAAGAGAAACTTGGTTTCATCGATTTTCAGCCGAAAACGTTGGGAAGCTGGGATGTCCAAATTCTTAACACTGCTTCTTATGGAGTTTCTAATAACTTTGATGAAACAAAGCAAGAAAATTCTCAAAGGGGCACTTTGTACGAACATGGGCGTCAAGAATTTCAGCCCGCTGACTCATCTTGGTCACACATGGTGCCTGTTTCTTCTCCCGGCTCTTCTTCTGTCACTACCACCATCAGTGGTAATAACAATATATTGGATTTCACTTATAATAACTCAGATCACAGAAAAAATCTTCTACAAGACCAAATATCCGAGTGTAATAGCACAGCAACACTTAGTGTTTGTAAGAAAGCTAGGGTTCAGTCATCTTCGAGTCAAGCACCTCTCAAGGTTCGGAAGGAGAAGCTAAGTGATAGAATAACAACACTTCACCAACTAGTTTCCCCGTTTGGAAAGACTGACACAGCTTCTGTCTTGTTGGAAGCCATTGGATATATAAGGTTTCTGCAGGGTCAAATTGAGGCACTAAGTTCTCCTTACTTGGACGATGCATCAAAAAACACGACGAATCAACAGTCTGTTGATGGAGAAAGAACCTGTGTTTTTCCAGAGGATCCGGGTCTGCTGTTGAAAGAGAATAATGGCCTGAAAAGAAAAGGAGGTACAAACCAGGAAGCAGAAGATAAAGCAAAGGAGTTGAAGAGTAGAGGGTTATGCTTGGTGCCGGTGTCTTGTACCCAACATGTTGTGACCCAAAATGAGTGGCACGGAAGAGGATTTTAA 930 0.4237 MMTGFPNWWSMHPPSFIPPQYLLPPSSFSFNLFTQNPDPPLSTGLSGEEEKLGFIDFQPKTLGSWDVQILNTASYGVSNNFDETKQENSQRGTLYEHGRQEFQPADSSWSHMVPVSSPGSSSVTTTISGNNNILDFTYNNSDHRKNLLQDQISECNSTATLSVCKKARVQSSSSQAPLKVRKEKLSDRITTLHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLDDASKNTTNQQSVDGERTCVFPEDPGLLLKENNGLKRKGGTNQEAEDKAKELKSRGLCLVPVSCTQHVVTQNEWHGRGF 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03886 309 Coils Coil 265 285 - -
Viun5g03886 309 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 46 297 - -
Viun5g03886 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Viun5g03886 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 229 IPR036638 GO:0046983
Viun5g03886 309 Gene3D - 176 242 IPR036638 GO:0046983
Viun5g03886 309 CDD bHLH_AtbHLH_like 179 226 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03886 Viun-Chr5 47186682 47189481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03886 133 256 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 59.542 2.31e-38 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03886 - - vun:114183597 613.224