Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03885 ATGGACGGAGGCTCTGACAAACTATCTTCTTCTTCGTCGTCGTCATCTTCTGTGGATGGTAAAACCTCGTCGATGAACCTGAAGGAGACAGAACTGAGGCTTGGTCTCCCTGGTTGCAAGTCGCCGGAGAGAAAATCTGGTTCTGGACTCTGTCTTTTTGGCAAAGAGTTGCAGAGCAAGCATAATGTTTGTTCAGTGGCAACCCCTTTGAAGGCTGGGGCTAAGAGGGGCTTCTCTGATGCTATTGACACTTCTTCTGGGAAAAGGGGTTCTTCTGTCACTGATGGATCTCAAGGACCTGCTTTGTTCTCTCCTAGAGGGGGCATTGTTATTGGTTTAGATACTCAAACTAATACCCCGCTTGCTAACACCTCCATCAAAGAGATTGGTGCAGTTCCTCAATCTGCCAAACCGGTTCAGGAAAAGAATGACCAGGTTGCTGCAACAAATGGTCATGCCACTGCTTCTGATGCAAAGGCACAGGTTGTGGGGTGGCCCCCAATTCGATCTTTCCGAAAGAACACGATGGCATCTAATTTGGCAAAAAACAATGATGAAGGCGAGGGAAAACCTGGTTTTGGTTGTCTTTATGTAAAAGTGAGTATGGATGGTGCTCCCTATCTTAGAAAGGTTGATCTCAAAACCTATAACAACTACATGGAACTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTTACCATTGGTCAATGCAATTCTCCTGGATTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTCTGAGGGATCTTCTTCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGACTGGATGCTTGTGGGTGATGTTCCTTGGGAGATGTTCACTGATTCATGTCGGAGACTAAGGATCATGAAAGGCTCTGAAGCAATTGGACTAGCTCCAAGAGCCATGGAGAAATCTCGAAGCCAAAACTAA 948 0.4536 MDGGSDKLSSSSSSSSSVDGKTSSMNLKETELRLGLPGCKSPERKSGSGLCLFGKELQSKHNVCSVATPLKAGAKRGFSDAIDTSSGKRGSSVTDGSQGPALFSPRGGIVIGLDTQTNTPLANTSIKEIGAVPQSAKPVQEKNDQVAATNGHATASDAKAQVVGWPPIRSFRKNTMASNLAKNNDEGEGKPGFGCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFSCFTIGQCNSPGFPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRAMEKSRSQN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03885 315 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 25 302 IPR003311 GO:0005634|GO:0006355
Viun5g03885 315 MobiDBLite consensus disorder prediction 81 101 - -
Viun5g03885 315 SUPERFAMILY CAD & PB1 domains 195 296 - -
Viun5g03885 315 MobiDBLite consensus disorder prediction 1 29 - -
Viun5g03885 315 FunFam Auxin-responsive protein 190 307 - -
Viun5g03885 315 Pfam AUX/IAA family 29 306 IPR033389 -
Viun5g03885 315 MobiDBLite consensus disorder prediction 84 99 - -
Viun5g03885 315 Gene3D - 192 309 - -
Viun5g03885 315 MobiDBLite consensus disorder prediction 1 44 - -
Viun5g03885 315 ProSiteProfiles PB1 domain profile. 195 297 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03885 Viun-Chr5 47168631 47171172 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03885 197 309 B3 DNA Binding Superfamily AT1G19850 32.174 5.04e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun5g03885 AUX_IAA 5.6e-91 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03885 K14484 - gmx:100804423 517.309