Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03884 ATGTCTAGAGCATTGGAACAGGATTACATAGGGTTGGCGGAGAAACCGTCAATGGACGGAGGCTCTGACAAACTATCTTCTTCTTCGTCGTCGTCATCTTCTGTGGATGGTAAAACCTCGTCGATGAACCTGAAGGAGACAGAACTGAGGCTTGGTCTCCCTGGTTGCAAGTCGCCGGAGAGAAAATCTGGTTCTGGACTCTGTCTTTTTGGCAAAGAGTTGCAGAGCAAGCATAATGTTTGTTCAGTGGCAACCCCTTTGAAGGCTGGGGCTAAGAGGGGCTTCTCTGATGCTATTGACACTTCTTCTGGGAAAAGGGGTTCTTCTGTCACTGATGGATCTCAAGGACCTGCTTTGTTCTCTCCTAGAGGGGGCATTGTTATTGGTTTAGATACTCAAACTAATACCCCGCTTGCTAACACCTCCATCAAAGAGATTGGTGCAGTTCCTCAATCTGCCAAACCGGTTCAGGAAAAGAATGACCAGGTTGCTGCAACAAATGGTCATGCCACTGCTTCTGATGCAAAGGCACAGGTTGTGGGGTGGCCCCCAATTCGATCTTTCCGAAAGAACACGATGGCATCTAATTTGGCAAAAAACAATGATGAAGGCGAGGGAAAACCTGGTTTTGGTTGTCTTTATGTAAAAGTGAGTATGGATGGTGCTCCCTATCTTAGAAAGGTTGATCTCAAAACCTATAACAACTACATGGAACTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTTACCATTGGTCAATGCAATTCTCCTGGATTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTCTGAGGGATCTTCTTCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGACTGGATGCTTGTGGGTGATGTTCCTTGGGAGATGTTCACTGATTCATGTCGGAGACTAAGGATCATGAAAGGCTCTGAAGCAATTGGACTAGCTCCAAGAGCCATGGAGAAATCTCGAAGCCAAAACTAA 999 0.4545 MSRALEQDYIGLAEKPSMDGGSDKLSSSSSSSSSVDGKTSSMNLKETELRLGLPGCKSPERKSGSGLCLFGKELQSKHNVCSVATPLKAGAKRGFSDAIDTSSGKRGSSVTDGSQGPALFSPRGGIVIGLDTQTNTPLANTSIKEIGAVPQSAKPVQEKNDQVAATNGHATASDAKAQVVGWPPIRSFRKNTMASNLAKNNDEGEGKPGFGCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFSCFTIGQCNSPGFPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRAMEKSRSQN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03884 332 FunFam Auxin-responsive protein 207 324 - -
Viun5g03884 332 MobiDBLite consensus disorder prediction 101 116 - -
Viun5g03884 332 SUPERFAMILY CAD & PB1 domains 212 313 - -
Viun5g03884 332 MobiDBLite consensus disorder prediction 21 46 - -
Viun5g03884 332 Gene3D - 209 326 - -
Viun5g03884 332 ProSiteProfiles PB1 domain profile. 212 314 IPR000270 GO:0005515
Viun5g03884 332 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 42 319 IPR003311 GO:0005634|GO:0006355
Viun5g03884 332 MobiDBLite consensus disorder prediction 98 118 - -
Viun5g03884 332 Pfam AUX/IAA family 46 323 IPR033389 -
Viun5g03884 332 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03884 Viun-Chr5 47168631 47171173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03884 214 326 B3 DNA Binding Superfamily AT1G19850 32.174 5.14e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun5g03884 AUX_IAA 6.8e-91 CL0072