Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03869 ATGATCGATACACCGTGTCACAAAACTCCTAGTAGCAGCGCCACCAACTCCTCCACTTCAAAACCCCATAAAACAGAGACTCCAAAACAGAGCAAGACCCAAAAACAGAGCAAGCCCAAGAGAAACAGAGACCCCACCAAGCATCCCGTCTACCACGGCGTTCGAATGCGCAATTGGGGCAAATGGGTATCCGAAATTCGCGAGCCACGCAAGAAATCACGCATATGGCTCGGAACTTTTGCCACGCCTGAAATGGCGGCACGCGCGCACGATGTTGCAGCTCTGAGCATCAAGGGCCACACCGCCGTTCTCAACTTCCCTAACCTAGTAAACATGCTCCCCAGACCCGTGACGTGCGCCCCACGTGACATTCAAGTGGCCGCCGCGGAAGCCGCCGCGATGGTGGAGTTCGACCGCGAGTGTTCCGATGAGGCGGAGTCGTCGGAGCTAAGCGAGATTGTGGAACTGCCGAACATAGAAGAGAGCTTGGAATCGGTGGAGTCGAGAAGTGAGTTCGCGCTTATTGACTCGGTGGATAGTTGGTTGTACCCTCCCATGGCAATGGGAAGCATTTGTGAGATGATGGTTGGTGAAGACGAGTGTGGATTCTTCCACTTTCAGAGTGATCATCAAAAAACATGTTCTGTTTAG 651 0.5315 MIDTPCHKTPSSSATNSSTSKPHKTETPKQSKTQKQSKPKRNRDPTKHPVYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGHTAVLNFPNLVNMLPRPVTCAPRDIQVAAAEAAAMVEFDRECSDEAESSELSEIVELPNIEESLESVESRSEFALIDSVDSWLYPPMAMGSICEMMVGEDECGFFHFQSDHQKTCSV 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03869 216 Pfam AP2 domain 49 100 IPR001471 GO:0003700|GO:0006355
Viun5g03869 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 29 163 - -
Viun5g03869 216 MobiDBLite consensus disorder prediction 25 51 - -
Viun5g03869 216 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Viun5g03869 216 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Viun5g03869 216 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Viun5g03869 216 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Viun5g03869 216 CDD AP2 51 109 IPR001471 GO:0003700|GO:0006355
Viun5g03869 216 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Viun5g03869 216 MobiDBLite consensus disorder prediction 1 51 - -
Viun5g03869 216 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Viun5g03869 216 MobiDBLite consensus disorder prediction 1 24 - -
Viun5g03869 216 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03869 Viun-Chr5 47118888 47119965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03869 29 185 AP2-EREBP Transcription Factor Family AT5G11590 55.495 2.57e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun5g03869 AP2 7.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03869 K09286 - gmx:100787471 335.495