Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun5g03869 | ATGATCGATACACCGTGTCACAAAACTCCTAGTAGCAGCGCCACCAACTCCTCCACTTCAAAACCCCATAAAACAGAGACTCCAAAACAGAGCAAGACCCAAAAACAGAGCAAGCCCAAGAGAAACAGAGACCCCACCAAGCATCCCGTCTACCACGGCGTTCGAATGCGCAATTGGGGCAAATGGGTATCCGAAATTCGCGAGCCACGCAAGAAATCACGCATATGGCTCGGAACTTTTGCCACGCCTGAAATGGCGGCACGCGCGCACGATGTTGCAGCTCTGAGCATCAAGGGCCACACCGCCGTTCTCAACTTCCCTAACCTAGTAAACATGCTCCCCAGACCCGTGACGTGCGCCCCACGTGACATTCAAGTGGCCGCCGCGGAAGCCGCCGCGATGGTGGAGTTCGACCGCGAGTGTTCCGATGAGGCGGAGTCGTCGGAGCTAAGCGAGATTGTGGAACTGCCGAACATAGAAGAGAGCTTGGAATCGGTGGAGTCGAGAAGTGAGTTCGCGCTTATTGACTCGGTGGATAGTTGGTTGTACCCTCCCATGGCAATGGGAAGCATTTGTGAGATGATGGTTGGTGAAGACGAGTGTGGATTCTTCCACTTTCAGAGTGATCATCAAAAAACATGTTCTGTTTAG | 651 | 0.5315 | MIDTPCHKTPSSSATNSSTSKPHKTETPKQSKTQKQSKPKRNRDPTKHPVYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGHTAVLNFPNLVNMLPRPVTCAPRDIQVAAAEAAAMVEFDRECSDEAESSELSEIVELPNIEESLESVESRSEFALIDSVDSWLYPPMAMGSICEMMVGEDECGFFHFQSDHQKTCSV | 216 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun5g03869 | 216 | Pfam | AP2 domain | 49 | 100 | IPR001471 | GO:0003700|GO:0006355 | |
Viun5g03869 | 216 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 29 | 163 | - | - | |
Viun5g03869 | 216 | MobiDBLite | consensus disorder prediction | 25 | 51 | - | - | |
Viun5g03869 | 216 | Gene3D | AP2/ERF domain | 50 | 108 | IPR036955 | GO:0003700|GO:0006355 | |
Viun5g03869 | 216 | SMART | rav1_2 | 50 | 113 | IPR001471 | GO:0003700|GO:0006355 | |
Viun5g03869 | 216 | PRINTS | Ethylene responsive element binding protein signature | 51 | 62 | IPR001471 | GO:0003700|GO:0006355 | |
Viun5g03869 | 216 | PRINTS | Ethylene responsive element binding protein signature | 73 | 89 | IPR001471 | GO:0003700|GO:0006355 | |
Viun5g03869 | 216 | CDD | AP2 | 51 | 109 | IPR001471 | GO:0003700|GO:0006355 | |
Viun5g03869 | 216 | FunFam | Ethylene-responsive transcription factor 2 | 49 | 108 | - | - | |
Viun5g03869 | 216 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Viun5g03869 | 216 | ProSiteProfiles | AP2/ERF domain profile. | 50 | 107 | IPR001471 | GO:0003700|GO:0006355 | |
Viun5g03869 | 216 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Viun5g03869 | 216 | SUPERFAMILY | DNA-binding domain | 50 | 108 | IPR016177 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun5g03869 | Viun-Chr5 | 47118888 | 47119965 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun5g03869 | 29 | 185 | AP2-EREBP Transcription Factor Family | AT5G11590 | 55.495 | 2.57e-59 | 184 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Viun5g03869 | AP2 | 7.8e-14 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun5g03869 | K09286 | - | gmx:100787471 | 335.495 |