Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun5g03858 | ATGCGCTCTCCTGAGCAACTCGGGTTAGGTGGGTGTGGAAGCAAGGGTGATGCGCCGAGGAAGCGTTCAAGTCCGATGATGAAGGTGGTGTGCATGACCCCAAGCAGCAGCCGGACGGGTGATAGAAACAACAGTGTTGTGATGGAGACGCCTTTGAAAGAATTGAAAAAGGATTCTCCGGTGGCTGATGTTGACGGTAACTCCTCCGCCGGTGGTCCTCAAGATGTGTACGGCGAGGATAGGGCGACGGAGGACCAGTTTGTTACCCCTTGGAGTGTCTCCGTTGCTAGTGGTTATACATTGTTACGAGATCCTCACTTCAACAAAGGGCTCGCCTTCAATGAAAAAGAGAGGGATGCTCACTACTTGCGTGGTCTTCTTCCCCCATCAGTTATTCCCCAAGAAACTCAGGTAAAGAAAATGATCCAGCACATACGCCAGTATCAAGTTCCATTGCAGAAGTACATGGCAATGATGGATCTTCAGGAGAGAAACGAACGTCTATTTTACAAACTTCTTATTGATCACGTTGAAGAGTTACTCCCTGTTGTTTACACTCCAACTGTTGGTGAAGCCTGTCAGAAATATGGAAGCATCTTTATGCGGCCTCAGGGTCTTTATATAAGTTTGAAAGAGAAGGGGAAGATCCGTGAAGTACTAAGGAATTGGCCTGAGAAGAACATTCAAGTCATAGTTGTTACTGATGGAGAACGGATCCTGGGTCTTGGTGATCTTGGTTGTCAGGGAATGGGAATACCTGTGGGGAAACTTTCTTTATATACTGCACTTGGAGGAGTTCGCCCATCAGCTTGTTTGCCTATTACCATTGATGTGGGTACAAACAATGAGAAGTTGCTGAATGATGAATTATACATTGGGCTAAAGCAAAGGCGTGCAACTGGGCAGGAGTACGCTGAGCTCATGAACGAATTCATGACAGCACTGAAGCAAACTTATGGAGAAAAGGTCCTAATTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTGCTTGAGAAATATAGGTCAACACATCTGGTCTTCAATGATGATATTCAGGGAACAGCTTCGGTTGTCCTTGCTGGATTAGTTGCAGCTCTGAAGTTGGTCGGTGGTAATTTAGCTGATCACAGATTCTTGTTCCTTGGTGCTGGAGAGGCTGGCACTGGAATAGCAGAACTCATAGCACTTGAAACATCAAAACAGACAAATGCTCCACTGGAGGAAGTGCGCAAGAATATTTGGTTGGTGGACTCAAAGGGATTAATTGTTAGCTCCCGCAAAGACTCACTCCAACATTTCAAGAAGCCCTGGGCTCATGAGCATGAACCTGTTAAAAATCTCTTAGATGCTGTTAATCAAATTAAGCCAACAGTGCTGATTGGAACATCAGGACAAGGAAGAACTTTTACTAAAGAGGTGATTGAGGCTATGTCTTCTATCAACGAGAAACCTATTATTCTTTCTCTTTCCAACCCTACGTCACAGTCAGAATGTACTGCTGAAGAAGCTTACAAATGGAGCCAGGGACGTGCCATTTTTGCAAGTGGGAGTCCATTTCCCCCGGTTGAATATGAGGGGAAAGTGTTTGTGCCTGGCCAGGCCAACAATGCATACATATTTCCTGGTTTCGGTCTCGGTTTGATAATGTCTGGGACCATTCGAGTGCATGATGACCTGCTTCTGGCTGCCTCTGAGGCTTTGGCTTCACAAGTGAGCCAAGAGAACTTTGACAAGGGACTCATATACCCACCATTCACCAACATCAGAAAGATTTCAGCACACATAGCTGCCAAGGTTGCTGCTAAGGCTTATGAGCTTGGTTTGGCAACTCGGCTTCCTCAACCAAAAGATTTGGTGAAGTTTGCGGAGAGTTGTATGTACACCCCATCCTACAGAACCTACCGGTGA | 1914 | 0.4577 | MRSPEQLGLGGCGSKGDAPRKRSSPMMKVVCMTPSSSRTGDRNNSVVMETPLKELKKDSPVADVDGNSSAGGPQDVYGEDRATEDQFVTPWSVSVASGYTLLRDPHFNKGLAFNEKERDAHYLRGLLPPSVIPQETQVKKMIQHIRQYQVPLQKYMAMMDLQERNERLFYKLLIDHVEELLPVVYTPTVGEACQKYGSIFMRPQGLYISLKEKGKIREVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLLNDELYIGLKQRRATGQEYAELMNEFMTALKQTYGEKVLIQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLADHRFLFLGAGEAGTGIAELIALETSKQTNAPLEEVRKNIWLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVKNLLDAVNQIKPTVLIGTSGQGRTFTKEVIEAMSSINEKPIILSLSNPTSQSECTAEEAYKWSQGRAIFASGSPFPPVEYEGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALASQVSQENFDKGLIYPPFTNIRKISAHIAAKVAAKAYELGLATRLPQPKDLVKFAESCMYTPSYRTYR | 637 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun5g03858 | 637 | CDD | NAD_bind_1_malic_enz | 353 | 631 | - | - | |
| Viun5g03858 | 637 | Gene3D | - | 96 | 350 | IPR037062 | GO:0004471 | |
| Viun5g03858 | 637 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Viun5g03858 | 637 | FunFam | Malic enzyme | 351 | 637 | - | - | |
| Viun5g03858 | 637 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 353 | 636 | IPR036291 | - | |
| Viun5g03858 | 637 | SMART | malic_2 | 162 | 343 | IPR012301 | GO:0004471 | |
| Viun5g03858 | 637 | MobiDBLite | consensus disorder prediction | 51 | 78 | - | - | |
| Viun5g03858 | 637 | SMART | Malic_M_2 | 353 | 606 | IPR012302 | GO:0051287 | |
| Viun5g03858 | 637 | FunFam | Malic enzyme | 96 | 350 | - | - | |
| Viun5g03858 | 637 | SUPERFAMILY | Aminoacid dehydrogenase-like, N-terminal domain | 76 | 352 | IPR046346 | - | |
| Viun5g03858 | 637 | PRINTS | Malic enzyme signature | 324 | 342 | IPR001891 | GO:0004470|GO:0004471 | |
| Viun5g03858 | 637 | PRINTS | Malic enzyme signature | 380 | 396 | IPR001891 | GO:0004470|GO:0004471 | |
| Viun5g03858 | 637 | PRINTS | Malic enzyme signature | 168 | 192 | IPR001891 | GO:0004470|GO:0004471 | |
| Viun5g03858 | 637 | PRINTS | Malic enzyme signature | 483 | 499 | IPR001891 | GO:0004470|GO:0004471 | |
| Viun5g03858 | 637 | PRINTS | Malic enzyme signature | 264 | 286 | IPR001891 | GO:0004470|GO:0004471 | |
| Viun5g03858 | 637 | PRINTS | Malic enzyme signature | 228 | 257 | IPR001891 | GO:0004470|GO:0004471 | |
| Viun5g03858 | 637 | PRINTS | Malic enzyme signature | 349 | 365 | IPR001891 | GO:0004470|GO:0004471 | |
| Viun5g03858 | 637 | Pfam | Malic enzyme, N-terminal domain | 162 | 343 | IPR012301 | GO:0004471 | |
| Viun5g03858 | 637 | PIRSF | ME | 60 | 637 | IPR001891 | GO:0004470|GO:0004471 | |
| Viun5g03858 | 637 | PANTHER | MALIC ENZYME-RELATED | 71 | 635 | - | - | |
| Viun5g03858 | 637 | ProSitePatterns | Malic enzymes signature. | 349 | 365 | IPR015884 | GO:0004471 | |
| Viun5g03858 | 637 | Gene3D | - | 351 | 637 | - | - | |
| Viun5g03858 | 637 | Pfam | Malic enzyme, NAD binding domain | 353 | 605 | IPR012302 | GO:0051287 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun5g03858 | Viun-Chr5 | 47025313 | 47030587 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun5g03858 | K00029 | - | gmx:100791514 | 1143.26 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Viun10g02618 | 10 | 39752376 | 39757458 | Viun5g03858 | 5 | 47025313 | 47030587 | ECH | |
| Viun3g00317 | 3 | 1848041 | 1853141 | Viun5g03858 | 5 | 47025313 | 47030587 | ECH | |
| Viun9g02784 | 9 | 36517868 | 36522389 | Viun5g03858 | 5 | 47025313 | 47030587 | ECH | |
| Viun5g03858 | 5 | 47025313 | 47030587 | Viun5g03858 | 5 | 47025313 | 47030587 | ECH | |
| Viun5g03858 | 5 | 47025313 | 47030587 | Viun9g02784 | 9 | 36517868 | 36522389 | ECH | |
| Viun5g03858 | 5 | 47025313 | 47030587 | Viun10g02618 | 10 | 39752376 | 39757458 | PCT |