Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03852 ATGAATCCTTCAATAAACCGCCGTTTGAGGTTGCTACATTTGTATATAGTTCTGCTCCGTCTTTGTTGCACGAGTTCTTATCCCACGCCAACAAACTGCACCGACACAAGCCGCGTTTGTACTTCTTTCTTGGCCTTCAAGCCTAAACCAAACCAAACCTTGGCTGTGATACAAAGCATGTTTGACGTGTTACCCGGTGAGATCACTTACGAAGACAATGGCTGGGATTATTTATTCATCAGAAAAAACTGTTCTTGTGATGCTGATACGAAGAAGTTTGTGTCTAACACCACACTAACAGTGAAATCCAATGGAGGGTTTGTGCATGATTTGGTGAAGGAAGCTTATGATGGGCTTGCTCTCTTGCCCAACACAACAAATGGGGCAAGAAAAGACCATGGTGTCATATCACTGAACTTGTTCTGTAGCTGCTCCAGTGGACTGTGGAACTATTTGATGAGTTATGTCATCAAAGATGGGGACAGTGTTGAATCACTAGCAAGCCGGTTTGGGGTTAGTATGGATAGCATTGAGACAGTGAATGGCATTGACGATCCTGGTAGCTTCTCTGTTGGTGCTCTCTATTATATACCTTTGAATTCGGTTCCTGGTGAGCTTTATCACTTCAAGAATGACACTCCTCCAGTACCAGTCCCTTCACCTTCTGTAGATGAATTTTCAGCCGACCAAATCAACCAGAAGGCTCGTGTGCCCCATGAATGGATCGTAGGAGGTTTTGCGGTTGGTCTTGCTCTGATAATATTAAGCATTGTTGTCTGTGTATTCCTGAGATCGCCCAATTGTTTGGTTGAAGCCAGAAATAATGCAACAAATTCTGCAGGAAAGATCTCTAATAAGTTCTATGTTTTTGGTAATCCAAATTTGTTTTGTGGATGTGGCAAACCGGTGGACCAGAAGCAAACTGATGGTGAATCCAGCAGCCACCAAATTACCGTAACAACCAAAGCATCGTCCCTAATACCTCACATGTTGGACATGGATAGGCCTGTAGTTTTTTCATACGAAGAGATTTTTGCCTCAACCGATGGTTTCTCTGATTCAAATCTGCTTGGGCACAGAGCACATGGTTCTGTTTACTATGGTCTCCTTCGTGACCAGGAAGTTGCTATTAAAAGAATTACAGCTACTAAAACTAAAGAATTTATGTCAGAGATAAAAGTTCTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGGTCGGCTATGCGGCGAGTCATGATGGTTTTTTCCTTATTTATGAATATGCTCAGAAGGGTTCACTCAGCAGCCATTTGCATGATACTCAAAATAAGGGTCATTCATCTCTTTCTTGGATCACAAGGGTCCAGATTGCACTTGACGCTGCTAGGGCCATTGAATACATACACGAACATACAAAAACTCGCTACGTCCATCAAGGTATCAAGACAAGCAACATATTGCTTGATGCTTCCTTTAGAGCCAAGATATCAGATTTTGGGTTAGCAAAACTAGTTGGTAAAACAAATGAGGGAGAAACCACAACATCCAAAGGTGTAAATGCATATGGGTATCTCGCTCCAGAATACTTTAGCAATGGCCTTGCAACGACCAAAAGCGATGTCTATGCATTTGGTGTTGTTCTTTTTGAGGTCATGTCAGGGAAGGAGGCCATCATTCAAACACAAGGTCCTGAAAAACGACCATTGGCATCTATTATGTTGGCAATTCTTAGGAACTCACCTGATTCCGTTAGCATGTCAAGCACAAGTAACCTCGTTGATCCTACTCTGATGGATCTGTATCCTCATGATTGTGTACATAAGATGGCCATGCTGGCAAAGCAATGTGTGGAAGAGGATCCCGTATTACGTCCTGACATGAAGCAAGTTGTGATTTCCCTCTCACAAATCCTGCTGTCTTCTGCTGAGTGGGAAGCCACTCTTGCCGGAAACAGCCAAGTATTCAGCGCTCTCGTTCAGGGAAGATAG 1971 0.4302 MNPSINRRLRLLHLYIVLLRLCCTSSYPTPTNCTDTSRVCTSFLAFKPKPNQTLAVIQSMFDVLPGEITYEDNGWDYLFIRKNCSCDADTKKFVSNTTLTVKSNGGFVHDLVKEAYDGLALLPNTTNGARKDHGVISLNLFCSCSSGLWNYLMSYVIKDGDSVESLASRFGVSMDSIETVNGIDDPGSFSVGALYYIPLNSVPGELYHFKNDTPPVPVPSPSVDEFSADQINQKARVPHEWIVGGFAVGLALIILSIVVCVFLRSPNCLVEARNNATNSAGKISNKFYVFGNPNLFCGCGKPVDQKQTDGESSSHQITVTTKASSLIPHMLDMDRPVVFSYEEIFASTDGFSDSNLLGHRAHGSVYYGLLRDQEVAIKRITATKTKEFMSEIKVLCKVHHANLVELVGYAASHDGFFLIYEYAQKGSLSSHLHDTQNKGHSSLSWITRVQIALDAARAIEYIHEHTKTRYVHQGIKTSNILLDASFRAKISDFGLAKLVGKTNEGETTTSKGVNAYGYLAPEYFSNGLATTKSDVYAFGVVLFEVMSGKEAIIQTQGPEKRPLASIMLAILRNSPDSVSMSSTSNLVDPTLMDLYPHDCVHKMAMLAKQCVEEDPVLRPDMKQVVISLSQILLSSAEWEATLAGNSQVFSALVQGR 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03852 656 SUPERFAMILY Protein kinase-like (PK-like) 325 628 IPR011009 -
Viun5g03852 656 ProSiteProfiles LysM domain profile. 153 197 IPR018392 -
Viun5g03852 656 SMART LysM_2 154 198 IPR018392 -
Viun5g03852 656 Gene3D Phosphorylase Kinase; domain 1 324 422 - -
Viun5g03852 656 Pfam Protein tyrosine and serine/threonine kinase 356 626 IPR001245 GO:0004672|GO:0006468
Viun5g03852 656 FunFam PTI1-like tyrosine-protein kinase 3 423 642 - -
Viun5g03852 656 Gene3D LysM domain 150 204 IPR036779 -
Viun5g03852 656 ProSiteProfiles Protein kinase domain profile. 351 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03852 656 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 30 650 IPR044812 GO:0019199|GO:0045087
Viun5g03852 656 SUPERFAMILY LysM domain 153 198 IPR036779 -
Viun5g03852 656 Gene3D Transferase(Phosphotransferase) domain 1 424 647 - -
Viun5g03852 656 Pfam LysM domain 155 187 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03852 Viun-Chr5 46983464 46988114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03852 12 656 Receptor kinase-like Gene Family AT1G51940 59.789 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Viun5g03852 PK_Tyr_Ser-Thr 4.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03852 - - vra:106762524 1238.02