Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03850 ATGGATGAAAGGTCAAGAAACGAGGTATCTCCTCAGCTGTTAGATTTGATCCCAAACGAGCGAGAGTGGCAGATGAACAGAAACGAAGGGAAGTCCTCAGAGGAGAGAAAGCTCGAACTGAGGCTTGGTCCACCTGGTGAGGACTGGTCTCTCGGTGGTAAAATGAAGAACGCCAACTCTGAAAGAGAAGAGTCTCTTCTCTCTCTTGGTTGCTTCCCTTCTTCGAACATGTCTCATGCAATACTCAGCCCCAACAATGGGTTCCAAAGCAAGGCCTCTCCATGGCCAAACTACCACAACCAGGTTAACAACAAAACCTCTTCACCTTTTCTTCAGTTCCCATCAGCTCCACCCGTGATGGGAAAAGATTCTTCACAAAACTGCTGCCCTAAGGTGGTAGAGTTGCAGAATGGTTGTGGTGGTGGAGATAGCAAAGTGTTCTCTCCCTCTTCTGCAAATACAGCTGTGTCCCAGCCCAACACCTCTCAGAAAAGAACTGCTCCCGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCCTTCAGGAAGAACCTTGCAAGTAGCAGCACTTCTAAGCCACCAACTGAGTCACAGCATGAGCAGCACAACAAGGTTGCAGGCAAAAAACCTGTTGATAACTATGGTGGTAAAGGTTTGTTTGTGAAGATCAACATGGATGGGGTTCCAATAGGGAGAAAAGTGGACCTCAATGCTTATGACAGCTATGAAAATCTCTCTTCTGCTGTGGACGAACTTTTCAGAGGTCTTCTTGCTGCTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGATGAAGAGAAAGCAATCACGGGATTATTGGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTGAGAGTGTTGAAGAGTTCAGAACTTTCTGCTTTTACCCTTGGCAGTAAGCAAGAGAAGATATCTCTCGACTCAGCAATGAAATGA 1032 0.469 MDERSRNEVSPQLLDLIPNEREWQMNRNEGKSSEERKLELRLGPPGEDWSLGGKMKNANSEREESLLSLGCFPSSNMSHAILSPNNGFQSKASPWPNYHNQVNNKTSSPFLQFPSAPPVMGKDSSQNCCPKVVELQNGCGGGDSKVFSPSSANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLASSSTSKPPTESQHEQHNKVAGKKPVDNYGGKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVHNKQDEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGSKQEKISLDSAMK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03850 343 Pfam AUX/IAA family 38 326 IPR033389 -
Viun5g03850 343 ProSiteProfiles PB1 domain profile. 217 321 IPR000270 GO:0005515
Viun5g03850 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 324 IPR003311 GO:0005634|GO:0006355
Viun5g03850 343 MobiDBLite consensus disorder prediction 22 43 - -
Viun5g03850 343 MobiDBLite consensus disorder prediction 181 195 - -
Viun5g03850 343 Gene3D - 213 332 - -
Viun5g03850 343 MobiDBLite consensus disorder prediction 1 57 - -
Viun5g03850 343 MobiDBLite consensus disorder prediction 144 210 - -
Viun5g03850 343 FunFam Auxin-responsive protein 213 333 - -
Viun5g03850 343 MobiDBLite consensus disorder prediction 144 167 - -
Viun5g03850 343 SUPERFAMILY CAD & PB1 domains 211 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03850 Viun-Chr5 46952622 46957155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03850 221 332 B3 DNA Binding Superfamily AT4G23980 33.929 8.31e-14 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun5g03850 AUX_IAA 2.5e-72 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03850 K14484 - gmx:100804593 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02609 10 39717970 39720973 Viun5g03850 5 46952622 46957155 ECH
Viun5g03850 5 46952622 46957155 Viun5g03850 5 46952622 46957155 ECH
Viun5g03850 5 46952622 46957155 Viun10g02609 10 39717970 39720973 PCT