Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun5g03849 | ATGGATGAAAGGTCAAGAAACGAGGTATCTCCTCAGCTGTTAGATTTGATCCCAAACGAGCGAGAGTGGCAGATGAACAGAAACGAAGGGAAGTCCTCAGAGGAGAGAAAGCTCGAACTGAGGCTTGGTCCACCTGGTGAGGACTGGTCTCTCGGTGGTAAAATGAAGAACGCCAACTCTGAAAGAGAAGAGTCTCTTCTCTCTCTTGGTTGCTTCCCTTCTTCGAACATGTCTCATGCAATACTCAGCCCCAACAATGGGTTCCAAAGCAAGGCCTCTCCATGGCCAAACTACCACAACCAGGTTAACAACAAAACCTCTTCACCTTTTCTTCAGTTCCCATCAGCTCCACCCGTGATGGGAAAAGATTCTTCACAAAACTGCTGCCCTAAGGTGGTAGAGTTGCAGAATGGTTGTGGTGGTGGAGATAGCAAAGTGTTCTCTCCCTCTTCTGCAAATACAGCTGTGTCCCAGCCCAACACCTCTCAGAAAAGAACTGCTCCCGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCCTTCAGGAAGAACCTTGCAAGTAGCAGCACTTCTAAGCCACCAACTGAGTCACAGCATGAGCAGCACAACAAGGTTGCAGGCAAAAAACCTGTTGATAACTATGGTGGTAAAGGTTTGTTTGTGAAGATCAACATGGATGGGGTTCCAATAGGGAGAAAAGTGGACCTCAATGCTTATGACAGCTATGAAAATCTCTCTTCTGCTGTGGACGAACTTTTCAGAGGTCTTCTTGCTGCTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGATGAAGAGAAAGCAATCACGGGATTATTGGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTGAGAGTGTTGAAGAGTTCAGAACTTTCTGCTTTTACCCTTGGCAGTAAGCAAGAGAAGATATCTCTTGACTCAGCAATGAAATGA | 1032 | 0.468 | MDERSRNEVSPQLLDLIPNEREWQMNRNEGKSSEERKLELRLGPPGEDWSLGGKMKNANSEREESLLSLGCFPSSNMSHAILSPNNGFQSKASPWPNYHNQVNNKTSSPFLQFPSAPPVMGKDSSQNCCPKVVELQNGCGGGDSKVFSPSSANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLASSSTSKPPTESQHEQHNKVAGKKPVDNYGGKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVHNKQDEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGSKQEKISLDSAMK | 343 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun5g03849 | 343 | Pfam | AUX/IAA family | 38 | 326 | IPR033389 | - | |
Viun5g03849 | 343 | ProSiteProfiles | PB1 domain profile. | 217 | 321 | IPR000270 | GO:0005515 | |
Viun5g03849 | 343 | PANTHER | AUXIN-RESPONSIVE PROTEIN IAA17 | 35 | 324 | IPR003311 | GO:0005634|GO:0006355 | |
Viun5g03849 | 343 | MobiDBLite | consensus disorder prediction | 22 | 43 | - | - | |
Viun5g03849 | 343 | MobiDBLite | consensus disorder prediction | 181 | 195 | - | - | |
Viun5g03849 | 343 | Gene3D | - | 213 | 332 | - | - | |
Viun5g03849 | 343 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
Viun5g03849 | 343 | MobiDBLite | consensus disorder prediction | 144 | 210 | - | - | |
Viun5g03849 | 343 | FunFam | Auxin-responsive protein | 213 | 333 | - | - | |
Viun5g03849 | 343 | MobiDBLite | consensus disorder prediction | 144 | 167 | - | - | |
Viun5g03849 | 343 | SUPERFAMILY | CAD & PB1 domains | 211 | 318 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun5g03849 | Viun-Chr5 | 46936156 | 46957157 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun5g03849 | 221 | 332 | B3 DNA Binding Superfamily | AT4G23980 | 33.929 | 8.31e-14 | 70.5 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | AUX or IAA | Viun5g03849 | AUX_IAA | 2.5e-72 | CL0072 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun5g03849 | K14484 | - | gmx:100804593 | 539.265 |