Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03844 ATGGGCAAAGCTACTAGATGGTTGAAGGGGTTGCTGGGAATGAAGAAAGAGAGAGACTGTTGTGGCTATTCTGGCTCACTGGCTTCTGACAAGAGGGAAAAGAAACAATCGGAGAAGAATGAAGAGAGTCACATTACACCATCTACCATTGATCATAGGCGCAGATTCTATGTTGCCAAAAAAGAGGGTGTGAAGAACAAACAGGTAACTGGTGTGGCAGTTGAGAGATCAAAAAGGAGTAACAGATACACCTTGATGATTGGAAGCAAGGAGGGTTGGGCTGCTGTGTCAATTCAATCCATCTTCAGAGGTTATTTGGCGCGAAAAGCTCTTAGAGCACTCAAAGGATTGGTTAAGATACAGGCTCTTGTTAGAGGATATCTAGTTCGAAAAAGGGTTGCTGCAACTCTTCACAGTGTGCAAGCAATGATAAGAGCTCAAGCTGTTGCTCGATCAGTTCGAGCTCGTCGTTCCATGGACAAGGAGAACAGATTTCATCCAGAATCTCCTTCCAGAAAATATGTGCAACAGTTTGATGAAACGAGACATTACCAATCTCGCAATAGAAGGGCACGCATATACTGCAAGACACCATTGAATGGATTTGATGAGAGCTCAAAAGTTTTTGAGGTTGACACTGGCATGGCTCATTCAAGATCTCGGAGCATTAACACTGCAATGTCTGAATGTGGAGAAGAGCTGCATTATCAAGCAATGTCCTCCTCTCTTCCATGTCCAGTTCAAGGTCGAATCTCTCTTCATGAAAGGCATCAGCACCCTCAAGAGTTTGAATGGTTCTTCAATCTTGATGAAGGTAACAATTTCTCCTCAGCACACAACACCCCTCGTTTATCAAAATGTATGATGCCAGCTACCCCATTGAAGAGTGTTTGTGGTGACACCTTTAGGCCTTGCTCCGATTTCCCTAACTACATGGCCAATACTCACTCTTCTATGGCCAAACTAAGATCTCACAGTGCTCCCAAGCAAAGACCTGAACTCAGAAAAAGGCTTTCAATCAGTGATATTATGGCATCCAGAAACAGTGTTAGTGGCGTTGGAAAACAGTGGTTATCCAACCCAAAAACTCAAGATTACTATGTCTTTGACAAGGTTATTTAG 1122 0.4332 MGKATRWLKGLLGMKKERDCCGYSGSLASDKREKKQSEKNEESHITPSTIDHRRRFYVAKKEGVKNKQVTGVAVERSKRSNRYTLMIGSKEGWAAVSIQSIFRGYLARKALRALKGLVKIQALVRGYLVRKRVAATLHSVQAMIRAQAVARSVRARRSMDKENRFHPESPSRKYVQQFDETRHYQSRNRRARIYCKTPLNGFDESSKVFEVDTGMAHSRSRSINTAMSECGEELHYQAMSSSLPCPVQGRISLHERHQHPQEFEWFFNLDEGNNFSSAHNTPRLSKCMMPATPLKSVCGDTFRPCSDFPNYMANTHSSMAKLRSHSAPKQRPELRKRLSISDIMASRNSVSGVGKQWLSNPKTQDYYVFDKVI 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03844 373 ProSiteProfiles IQ motif profile. 115 142 IPR000048 GO:0005515
Viun5g03844 373 MobiDBLite consensus disorder prediction 28 46 - -
Viun5g03844 373 MobiDBLite consensus disorder prediction 25 46 - -
Viun5g03844 373 Gene3D - 52 115 - -
Viun5g03844 373 Gene3D - 116 165 - -
Viun5g03844 373 Pfam IQ calmodulin-binding motif 93 112 IPR000048 GO:0005515
Viun5g03844 373 Pfam IQ calmodulin-binding motif 118 132 IPR000048 GO:0005515
Viun5g03844 373 PANTHER IQ-DOMAIN 5-RELATED 1 350 - -
Viun5g03844 373 Pfam Protein of unknown function (DUF4005) 275 351 IPR025064 -
Viun5g03844 373 SMART iq_5 113 134 IPR000048 GO:0005515
Viun5g03844 373 SMART iq_5 90 112 IPR000048 GO:0005515
Viun5g03844 373 ProSiteProfiles IQ motif profile. 94 119 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03844 Viun-Chr5 46900843 46902784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03844 1 353 IQD Protein Family AT3G16490 40.759 9.88e-70 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03844 - - gmx:100797296 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03844 5 46900843 46902784 Viun5g03844 5 46900843 46902784 ECH
Viun5g03844 5 46900843 46902784 Viun10g02603 10 39690750 39692806 PCT