Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03834 ATGGATGGAAAATGGAGATGCCATTGGGCTTGGAGCTTCACCTTATGGTGTGTCCTTGCATATACCATTTCAGAATTTTCAGGAATGTCCATAGTTCTGGCCACAGAGGAGAACTCTATGCATCACAAACAAGGAAGAAGGAAACTAGATGATGTCAGTGGTTCTATTTCCATTGACTGTGGGATAGCAGAAGAAGTGGCTTACACTGATGAGAAAACTCAGATTCATTACACTTCAGATGCACAGTTTATTGGCACTGGAACAAGCAAAAACATATCCCTCATGCTCAGTTCTGAAATACCCCAAAGAGTTTTCACTACTGTGAGAAGCTTCCCTGAGGATAAAAGAAACTGCTACACACTACGACACCCAGAAGGCGGAAATACTATTTACTTGATAAGAGCTTCTTTTATGTATGGAAACTATGATGACTTGAACAAGCTGCCACAGTTTGATCTCTATGTTGGGGTCAATTTTTGGGACTCTGTGATGTTTGAAAATGCCACTCATGTTGTAATCAAGGAAATTTTACATGTGCCATCCTTGGATGAATTATATATTTGTTTATTGAATACTGATATGGGAACTCCTTTTATATCAGCACTGGAGGTGAGGCATTTTGATCATTCCAGTTACAGAACAAACTCTGAACTCTTATCCCTATATAGACGTTTTGACATTGGATCAATAACCAATGAAATAGTGAGATTTAACGAAGATACTTATGATCGAATGTGGTATCCTTACAACTTACCAGATTCTACACCACTCAGTACTTCCCAACCCATTGACTCCTTGAACCATACTGCTTATCACCTTCCAGCAGCAGTAATGAAAACTGCTTTGAGACCAACAAATGAAAATGATTCTCTGGAATTTGATTTTGACACCGGAAATCCTACTTCAGATTCATATGTTTACATGCACTTTGCTGAAATTGAAAAGCTTAAGGACAACGAAAGCAGGGTATTCGACATTACACTGAATGGAAAAGTTTTGTCTGAATCTGTGACTCCCAAGCATTTGCTGTCAACTACGGTAGAAAGTAAACAGGCCATTAGGGGAAGCAAGCTCAAGTTTTCTATGTACAAGAAACCAAATTCCACCCATCCTCCCATTCTAAATGCGATGGAGATTTATGTTGTTAAAGAATTCTTGCAAAAACCTACTGGTCAAGAAGATGTTAAGGCTATCATGTCCATCAAATCATATTACAAGTTGATGTCGTCGTTGGGTAAATCTTGGCAAGGAGACCCTTGTGCACCGTTGAAATACTCTTGGAATGGTATAAACTGCAGCAATAATGGATATGAACCACCAACAATAACTGCGTTAAACCTAGCGTCCAGTGGATTAGATGGCCCCATAATTGATTCTTTTTTGGAACTCAAATTCTTGGAATTCTTGGATTTATCAAATAATAGCTTAACAGGATCACTGCCTGATTTTTCAAAGCTGCAATACTTAAAAACTCTCAATTTATCAGGGAACAGACTCTCGGGTGAAATTCCTCCACTTCTCATGGAAAGATCAAATAATGGTTCCCTTATGTTGAGTGTGGATCCGGATCTCTGCCCAATAGGCCCATGTGAAGAGAAGAAAAACAATATTGTTCCACTTGTAGCAGGCATTCTTTCAGCTGTAGTCTTTCTCATTGTATTGGGTATTGTGCTGACTATCATTTGGAGGAGACGCAACAAAGAAACAGCCTCAAATCAAGCTGTGAGATCAAACGAAGAAGTTGTGCTGAAGACAAACAACAAACAGTTCTCGTACTCTCAGATAATGACTATAACCAATAACTTTGACAAAACAATTGGGAAGGGAGGGTATGGAATTGTTTATCTTGGTTACTTACAGGATGGCACACAAGCTGCTGTCAAAATGCTCTCTTCTAAATCTCCTCAAGGATCTCAGCAGTTTCAGACAGAGGCTCAACTCTTAATGCGTGTGCATCATAAGAACTTAGCTTCCTTTCTTGGATACTGTAATGAAGTTGGACGCACAGCCATCATTTATGAATACATGACTAATGGTAACTTGGAAGAGTATCTTTCAGATCCTAGGAGAGAACCATTGAGTTGGAGACAGAGGATTCAGATAGCAGTTGATGCTGCTCAAGGTATCGAGTACTTGCATCACGGTTGCAAGCCACCAATAGTCCATAGAGACATAAAGACTGCAAACATTTTACTGAATGAGAAAATGCAAGCAAAAGTAGCTGATTTTGGTTTCTCAAAATTTTTCTCCGCTGAAAATGAAAGTCACGTATCAACTGTAGTTATTGGCACGTTTGGATATCTTGATCCAGAATACTACATATCCAGCAGGCTGACTGAAAAAAGCGACGTTTATAGTTTTGGCATTGTGCTTTTGGAGCTAATTACCGGGCAGCCAGCTATAATAAAAGGTCATCAGAACACTCACATTGTGCAATGGGTTAACCAGTTTCTTGAAAGGGGAGATATACAACAAATTGTTGATCCAAAGATGCAAAGAGATTTTGACTTTGGTTCTATGTGGAAGGCCTTGGAGGCAGCAGTGGCTTGTGTGCCTTCAATCTCTATCCAAAGACCATCAATGAATTACGTTGTCGCTGAACTGAAAGAGTCCTTAAAAATGGAAGCGAGTAGAGAACAAGAAGGCGTCAACTCCATTGAAATGAACGTTGTTGATCTTGAAGCTCATTGGGGCCCAGATGCAAGATAA 2709 0.3961 MDGKWRCHWAWSFTLWCVLAYTISEFSGMSIVLATEENSMHHKQGRRKLDDVSGSISIDCGIAEEVAYTDEKTQIHYTSDAQFIGTGTSKNISLMLSSEIPQRVFTTVRSFPEDKRNCYTLRHPEGGNTIYLIRASFMYGNYDDLNKLPQFDLYVGVNFWDSVMFENATHVVIKEILHVPSLDELYICLLNTDMGTPFISALEVRHFDHSSYRTNSELLSLYRRFDIGSITNEIVRFNEDTYDRMWYPYNLPDSTPLSTSQPIDSLNHTAYHLPAAVMKTALRPTNENDSLEFDFDTGNPTSDSYVYMHFAEIEKLKDNESRVFDITLNGKVLSESVTPKHLLSTTVESKQAIRGSKLKFSMYKKPNSTHPPILNAMEIYVVKEFLQKPTGQEDVKAIMSIKSYYKLMSSLGKSWQGDPCAPLKYSWNGINCSNNGYEPPTITALNLASSGLDGPIIDSFLELKFLEFLDLSNNSLTGSLPDFSKLQYLKTLNLSGNRLSGEIPPLLMERSNNGSLMLSVDPDLCPIGPCEEKKNNIVPLVAGILSAVVFLIVLGIVLTIIWRRRNKETASNQAVRSNEEVVLKTNNKQFSYSQIMTITNNFDKTIGKGGYGIVYLGYLQDGTQAAVKMLSSKSPQGSQQFQTEAQLLMRVHHKNLASFLGYCNEVGRTAIIYEYMTNGNLEEYLSDPRREPLSWRQRIQIAVDAAQGIEYLHHGCKPPIVHRDIKTANILLNEKMQAKVADFGFSKFFSAENESHVSTVVIGTFGYLDPEYYISSRLTEKSDVYSFGIVLLELITGQPAIIKGHQNTHIVQWVNQFLERGDIQQIVDPKMQRDFDFGSMWKALEAAVACVPSISIQRPSMNYVVAELKESLKMEASREQEGVNSIEMNVVDLEAHWGPDAR 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03834 902 ProSiteProfiles Leucine-rich repeat profile. 488 510 IPR001611 GO:0005515
Viun5g03834 902 FunFam Leucine-rich repeat receptor-like kinase 393 523 - -
Viun5g03834 902 FunFam Leucine-rich repeat receptor-like protein kinase 576 675 - -
Viun5g03834 902 ProSiteProfiles Leucine-rich repeat profile. 465 487 IPR001611 GO:0005515
Viun5g03834 902 CDD STKc_IRAK 606 870 - -
Viun5g03834 902 Pfam Malectin-like domain 58 381 IPR024788 -
Viun5g03834 902 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 676 881 - -
Viun5g03834 902 Pfam Protein tyrosine and serine/threonine kinase 602 815 IPR001245 GO:0004672|GO:0006468
Viun5g03834 902 ProSiteProfiles Protein kinase domain profile. 600 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03834 902 Gene3D - 224 382 - -
Viun5g03834 902 SUPERFAMILY L domain-like 397 510 - -
Viun5g03834 902 PANTHER OS07G0107800 PROTEIN-RELATED 56 872 - -
Viun5g03834 902 Pfam Leucine Rich repeats (2 copies) 466 505 IPR025875 -
Viun5g03834 902 SMART serkin_6 600 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03834 902 SUPERFAMILY Protein kinase-like (PK-like) 580 868 IPR011009 -
Viun5g03834 902 PRINTS Leucine-rich repeat signature 466 479 - -
Viun5g03834 902 PRINTS Leucine-rich repeat signature 486 499 - -
Viun5g03834 902 Gene3D Ribonuclease Inhibitor 391 539 IPR032675 -
Viun5g03834 902 Gene3D Transferase(Phosphotransferase) domain 1 676 895 - -
Viun5g03834 902 ProSitePatterns Serine/Threonine protein kinases active-site signature. 720 732 IPR008271 GO:0004672|GO:0006468
Viun5g03834 902 Gene3D Phosphorylase Kinase; domain 1 582 675 - -
Viun5g03834 902 ProSitePatterns Protein kinases ATP-binding region signature. 606 628 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03834 Viun-Chr5 46843075 46847720 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03834 48 902 Receptor kinase-like Gene Family AT2G19210 46.490 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Viun5g03834 Malectin_like 4.1e-108 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03834 - - gmx:100791717 1536.55