Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03829 ATGTGGATGAGTTTCTACGTTGCTGTTTTAGCTGTTCTACTTATTCAAGCTCATGCTCAACCAGGATTCATCAGCATAGATTGCGGAGCTGAAGCAGGTGTGAACTATACCCAGCCATATCTAGGCATAGATTACGTTTCCGATGCAGATTTCATAAATACCGGTGTGAGTGAGACAATAGCAACTGAAGAGAGCAACAGATACAGCTATCAACAACAACTGTGGAAGCTTAGAAGCTTCCCGGAAGGAAAAAGGAACTGCTACAAAATAAGCGTCACAAGAGGCACTACGTATCTCATCCGCACTACTTTTCTGTACGGAAATTATGATGGGCTGAATAAGACACCACAGTTTGATCTTTTTCTGGGACCTAACCACTGGGTTAAAGTCAATATACAAAATGCATCCAGGGACCAATTCAATGAGATCATACATGTACCTTCCCGGGATTATGTGCAAATCTGTCTGATTAACACAGACCACGGCACACCATTTATAACAGCCATAGAATTCAGGACTTTGAAAAATGATACATACGTCACTCAATTCGGATCATTGGAACTTTACAATTTCCTGCGCTGCGATTTGGGTTCAAACACATCGTACAGGTACCCGGTTGATGTTTATGATCGTGTCTGGAATGATCGTTCCTGGTATGCCTGTAATTTCGGCCAAAATTGGAAACCACTAAATGCCTTCATTCCTGAACCACTAAATCAGACGGATTACAAGCCGGGAGCTACTATCATGAGCACCGCAGTTGAACCAGAAAATGATAGTGCTCCGTTGGTAATAAGCTGGCAGCCAAAAGATGAAACTGAGCTATTCTATGTGTACATGCACTTCACGGAACTGTTCACCACGAATCAGACAAGACAATTCAACGTCATCAGCAACGGTGAATTAAGTATTCCAAATTTTTCTCCGCAGTACCATAATGTCAGTACCATATCTTCGACGTCAGCCATCAGCGGGAAAGTAATTAATTTTTCACTGGAGAGGACAAAAAATTCTACCCTGCCTCCCATCATCAGTGCCATTGAAATTTACAGAGTAATAGACTTACAGAAACCAGAGACATTCCAAGGAGATGTTGATGCAATTACAAGCATTAAGTCAGCCTACGGAGTGAAAAGGGATTGGGAAGGTGATCCATGCGCCCCTGCAGCCTACTTGTGGGATGGTCTCAACTGCAACGATTTTCTAAGAATCACGACTCTGAATTTATCTTCAAGTGGATTGTCAGGAAAGATACACCCTTCTATCTCAAACCTCACCATGTTGGAAAAGCTGGATTTATCTAACAATAACTTAAATGGTGAAGTTCCTGATTTTCTGTCTCAACTACAACACTTGAAGATCTTAAACTTGGAGAAGAATAACCTCTTCGGTTCGATTCCCTCTGCACTTGTTCAAAAATCACACCAAGGTTTTCTCTCACTAAGTGCGGGTCAAAATCCATATCTATGTGAATCTGGTCAATGCAAGGAGAAGGAAAAAAATAACACTGTTACACCCATAGTAGCATCAATTAGTGGGGTTTTAATTCTTCTAATAGCCGTTGCAATATTGTGGATCCTTAAAAGGAAAAAATCAAAAGTTGAAAAATTTACAGATTCGGTGGCATCAAATCATCGGAGTTTAATTTCACAGCAATCCACTGGAAAGGATAATTCGTTCCAGCAACTCAAAAGTCAAATGTATTCATACTATGATGTCCTTCACATCACTAACAATTTCAGTACAATTATTGGTAAAGGAGGATTTGGAACAGTTTACCTGGGCTTTATCGATGACACTCCAGTTGCAGTGAAAATGCTTTCCCCATCAGCAGTTCATGGTTATCAACAATTTCAAGCAGAGGTAAAACTTCTAATCAGGGTTCATCACAAAAACTTGACATCCCTCATTGGTTACTGTAACGAAGGAACCAATAAAGGTCTCATATATGAGTACATGGCTAAAGGGAACTTACGAGAACATCTCTCAGGTAAATACAACGAATCACCATTCTTGAGCTGGAAGGACAGACTTCGTGTAGCAGTGGATGCAGCCTTAGGATTGGAATATCTGCAAAATGGTTGCAAGCCTCCTATAATCCACAGAGATATAAAATCTACAAACATCTTGTTGGATGAACACTTCCAAGCAAAGTTATCTGATTTCGGTCTTTCCAAAGCTGTCCCAGATGATGGGAGATCTCATATGTCAACTATTGTTGCTGGTACTGTTGGTTATCTGGACCCTCACTACCACTCTTCCAATAGATTAACACAGAAAAGTGATGTTTATAGCTTTGGAGTTGTTCTTTTGGAAATAATCACAAATCAAGCAGTAATGGCAGGGAATGAAGAAAGTGGTCACATAAGTGAACGAGTTAGGTCCATGATATCAAAAGGGGATATCAGGGCCGTAGTTGACTCAAGCTTAGAAGGAGATTTTGACATAAACTCAGCATGGAAAGCCGTAGAAATAGCAATGGCTTGTGTTTCTCCAAATCCCAACGAAAGGCCAATGATGAGTGTGGTAGTGATTGAACTACAGGAGACTTTAGCGGCCGAATTAGCTAGAACAAACCATTACAGTGGTGCTGATCTCAGGTATTCTGTTGCACCGGTCAGCATGGCTTTAAACACCGAATATATGCCCTTAGCTAGGTAA 2661 0.4081 MWMSFYVAVLAVLLIQAHAQPGFISIDCGAEAGVNYTQPYLGIDYVSDADFINTGVSETIATEESNRYSYQQQLWKLRSFPEGKRNCYKISVTRGTTYLIRTTFLYGNYDGLNKTPQFDLFLGPNHWVKVNIQNASRDQFNEIIHVPSRDYVQICLINTDHGTPFITAIEFRTLKNDTYVTQFGSLELYNFLRCDLGSNTSYRYPVDVYDRVWNDRSWYACNFGQNWKPLNAFIPEPLNQTDYKPGATIMSTAVEPENDSAPLVISWQPKDETELFYVYMHFTELFTTNQTRQFNVISNGELSIPNFSPQYHNVSTISSTSAISGKVINFSLERTKNSTLPPIISAIEIYRVIDLQKPETFQGDVDAITSIKSAYGVKRDWEGDPCAPAAYLWDGLNCNDFLRITTLNLSSSGLSGKIHPSISNLTMLEKLDLSNNNLNGEVPDFLSQLQHLKILNLEKNNLFGSIPSALVQKSHQGFLSLSAGQNPYLCESGQCKEKEKNNTVTPIVASISGVLILLIAVAILWILKRKKSKVEKFTDSVASNHRSLISQQSTGKDNSFQQLKSQMYSYYDVLHITNNFSTIIGKGGFGTVYLGFIDDTPVAVKMLSPSAVHGYQQFQAEVKLLIRVHHKNLTSLIGYCNEGTNKGLIYEYMAKGNLREHLSGKYNESPFLSWKDRLRVAVDAALGLEYLQNGCKPPIIHRDIKSTNILLDEHFQAKLSDFGLSKAVPDDGRSHMSTIVAGTVGYLDPHYHSSNRLTQKSDVYSFGVVLLEIITNQAVMAGNEESGHISERVRSMISKGDIRAVVDSSLEGDFDINSAWKAVEIAMACVSPNPNERPMMSVVVIELQETLAAELARTNHYSGADLRYSVAPVSMALNTEYMPLAR 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03829 886 SMART serkin_6 578 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03829 886 ProSitePatterns Protein kinases ATP-binding region signature. 584 605 IPR017441 GO:0005524
Viun5g03829 886 SUPERFAMILY L domain-like 391 482 - -
Viun5g03829 886 Gene3D Phosphorylase Kinase; domain 1 550 652 - -
Viun5g03829 886 Gene3D Ribonuclease Inhibitor 365 479 IPR032675 -
Viun5g03829 886 Gene3D Transferase(Phosphotransferase) domain 1 653 865 - -
Viun5g03829 886 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 653 860 - -
Viun5g03829 886 ProSiteProfiles Protein kinase domain profile. 578 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03829 886 FunFam Leucine-rich repeat receptor-like kinase 363 491 - -
Viun5g03829 886 Pfam Malectin-like domain 26 352 IPR024788 -
Viun5g03829 886 CDD STKc_IRAK 584 849 - -
Viun5g03829 886 PANTHER OS07G0107800 PROTEIN-RELATED 24 851 - -
Viun5g03829 886 ProSitePatterns Serine/Threonine protein kinases active-site signature. 699 711 IPR008271 GO:0004672|GO:0006468
Viun5g03829 886 SUPERFAMILY Protein kinase-like (PK-like) 560 846 IPR011009 -
Viun5g03829 886 Pfam Protein tyrosine and serine/threonine kinase 581 845 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03829 Viun-Chr5 46822942 46829638 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03829 11 886 Receptor kinase-like Gene Family AT1G51800 47.032 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Viun5g03829 Malectin_like 1e-103 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03829 - - vum:124830965 1234.55