Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03828 ATGGCGCTGACACTCATATGTCGATCATCTTGTACAATGTGGATGAGTTTCTACATTGCTTTTTTAACTCTTCTACTTATCCAAGCTCATGCTCAACCAGGATTCATCAGCATAGATTGCGGAGCTGAAGCAGGTGTGAAATATACCGAGCAAAATCTAGCCATAGATTACGTTTCGGATGCAGATTTCATAAATACTGGTGTGATTGGGATAATAGCATCTGAAGAGCTCAACAGATACGATCAACGACAACTGTGGAGGCTTAGAAGCTTCCCGGAAGGAAAAAGGAACTGCTACAAAATAAGCGTCACAAGAGGCTCTAAGTATCTCATCCGCACGATTTTTGTGTATGGAAATTATGATGGCCGAAATATGGCACCGAAGTTTGATCTTCTTCTGGGACCTAACCACTGGGATACAATCACTACACTCAATGCATCCAATCTCGTGTTCATGGAGATCATTCACGTACCTTCACTGGACTATGTACAAATCTGTCTGGTTAACACAGACAATGGCACACCATTTATAACAGCTATAGAATTGAGGACTTTGAAAAATAATACATACGTCACTCAATTTGGATCACTGAAAAGTTACCGGCGGTGCGATTTGGGTTCAAACAGAGGCTACAGGTACTGGGCTGATGTTCATGATCGTTACTGGTACCCCTGTAACTTTGGTGAAAATAAGAAACAACTAAATGGTTGGACTCGATATGATTCTTTGAATGGGAGCGATCTTTACCAACCGGGAGCTTTAATCATGGACACGGCACTTGAATCAGAAAATGATAATGCTCCATTGGTAATAAGGTGGGAGCCAAAAGATGAAACTGACCGATTCTACGTGTACATGCACTTTAAGGAGATCCAACTGTTAACAAGAAATCAAACAAGACAATTCAACATCACGGTGAACGGTGAATTAAGAGTTCAAAATTTTTCTCCTCAGTACCAAAGTGTGGATACTATATATACGACGTCAGCGATAAGCGGGAAAGAAATTAAATATACCCTAGAGAGGACCGAAAATTCAACCCTGCCTCCCATCATCAATGCTATTGAAATTTACGAAGTAATAGACTTACAGAAACCACAAACATTTCAAGGAGATGTTGATGCAATTACAAGCATTAAGTCAGTTTATGGAGTGAAAAGGGATTGGGAAGGTGATCCATGCGCCCCTGCAGCATACTTGTGGGATGGTCTCAACTGTACTCATCTCGGCAACGAGATCCCAAGAATCACGACTCTGAATTTATCTTCAAGTGGATTGTCAGGAAAGATAGACCCTTCTATCTCAAACCTCACCATGTTGGAGAACCTGGATTTATCTAAGAATAACTTAAATGGTGAAGTTCCTGATTTTCTGTCTGAATTACAAAACTTGAAGATCTTAAACTTGGAGAAGAATAACCTCTTCGGTTCGATTCCCTCTGCACTTGTTCAAAAATCACACCAAGGTTTTCTCTCACTAAGAGTGGGTCAAAATCCATATCTATGTGAATCTGGACAATGCAATGAGAAGGAAAAGAAAATCACTGTTACACCCATAGTAGCATCAGTTAGTGGGGTTTTAGTTCTTCTAATAGCCGTTGCTATGTTGTGGATCTTTAAAAGGAAAAAATCAAAAGTTGAGAAATTTACAGATTCGGAGGCGGTAAATCATCCGAATGAGATTTCACAGCAATCCACAGAAAAGGATGAATTGTTCCTGCAACGCAAAAGTCAAATGTATTCATACTATGATGTCCTTCAAATCACTAACAATTTCAATAAAATTATTGGTAAAGGAGGATTTGGAACAGTTTACCTGGGCTTTATCGCTGACACTCCAGTTGCAGTGAAAATGCTTTCCCCATCGGCAGCTCATGGTTATCAACAATTTCAAACAGAGGTTAAACTTCTAATCAGAGTCCATCACAAAAATTTGACATCCCTTGTTGGTTACTGTAACGAAGGAACCAATAAGTGCCTTATATATGAATACATGGCTAAAGGGAACTTACGAGAACATCTCTCAGGTAAACACAACGAATCACCATTCTTGAGCTGGAAGGACAGACTTCGTGTAGCAGTGGATGCAGCCTTAGGATTGGAATATCTGCAAAATGGTTGCAAGCCTCCTATAATCCACAGAGATGTAAAATCTACAAACATCTTGTTGGATGAACACTTCCAAGCAAAGTTATCTGATTTCGGTCTATCCAAAGTTGTCCCAGATGATGGGAGGTCTCATGTGTCAACTGTTGTTGCCGGTACTTTTGGTTATCTGGACCCTCACTATCACTCTTCCAATAGATTAACACAGAAAAGCGATGTTTATAGCTTTGGGGTTGTTCTTTTGGAAATAATCACAAATCAAGCAGTAATGGCAGAGAATGAAGAACCGGGTCACATAAGTGAACGAGTTAACTCCATGATATCAAAAGGGGATATCAGGGCCATAGTTGACTCAAGCTTAGAAGGAAATTTTGACATAAACTCAGCGTGGAAAGCTGTAGAAATAGCAATGGCTTGTGTTTCTCCAAATCCATACGAAAGGCCAATGATAAGTGTGGTAGTGATTGAACTACAGGAGGCTTTAGCGACGGAATTAGCAAGAACAAAGCATGATAGTGGTGCTGATCTCAGGTATTCAGTTGCACCGGTCAGCGTGAATGTAGACACCGAATTCATGCCCTCGGCTAGGTAA 2697 0.4038 MALTLICRSSCTMWMSFYIAFLTLLLIQAHAQPGFISIDCGAEAGVKYTEQNLAIDYVSDADFINTGVIGIIASEELNRYDQRQLWRLRSFPEGKRNCYKISVTRGSKYLIRTIFVYGNYDGRNMAPKFDLLLGPNHWDTITTLNASNLVFMEIIHVPSLDYVQICLVNTDNGTPFITAIELRTLKNNTYVTQFGSLKSYRRCDLGSNRGYRYWADVHDRYWYPCNFGENKKQLNGWTRYDSLNGSDLYQPGALIMDTALESENDNAPLVIRWEPKDETDRFYVYMHFKEIQLLTRNQTRQFNITVNGELRVQNFSPQYQSVDTIYTTSAISGKEIKYTLERTENSTLPPIINAIEIYEVIDLQKPQTFQGDVDAITSIKSVYGVKRDWEGDPCAPAAYLWDGLNCTHLGNEIPRITTLNLSSSGLSGKIDPSISNLTMLENLDLSKNNLNGEVPDFLSELQNLKILNLEKNNLFGSIPSALVQKSHQGFLSLRVGQNPYLCESGQCNEKEKKITVTPIVASVSGVLVLLIAVAMLWIFKRKKSKVEKFTDSEAVNHPNEISQQSTEKDELFLQRKSQMYSYYDVLQITNNFNKIIGKGGFGTVYLGFIADTPVAVKMLSPSAAHGYQQFQTEVKLLIRVHHKNLTSLVGYCNEGTNKCLIYEYMAKGNLREHLSGKHNESPFLSWKDRLRVAVDAALGLEYLQNGCKPPIIHRDVKSTNILLDEHFQAKLSDFGLSKVVPDDGRSHVSTVVAGTFGYLDPHYHSSNRLTQKSDVYSFGVVLLEIITNQAVMAENEEPGHISERVNSMISKGDIRAIVDSSLEGNFDINSAWKAVEIAMACVSPNPYERPMISVVVIELQEALATELARTKHDSGADLRYSVAPVSVNVDTEFMPSAR 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03828 898 SMART serkin_6 590 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03828 898 Gene3D Ribonuclease Inhibitor 374 491 IPR032675 -
Viun5g03828 898 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 665 872 - -
Viun5g03828 898 Gene3D Phosphorylase Kinase; domain 1 572 664 - -
Viun5g03828 898 Pfam Malectin-like domain 38 360 IPR024788 -
Viun5g03828 898 ProSiteProfiles Protein kinase domain profile. 590 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03828 898 Gene3D - 206 361 - -
Viun5g03828 898 Gene3D Transferase(Phosphotransferase) domain 1 665 881 - -
Viun5g03828 898 Pfam Protein tyrosine and serine/threonine kinase 592 856 IPR001245 GO:0004672|GO:0006468
Viun5g03828 898 SUPERFAMILY Protein kinase-like (PK-like) 573 857 IPR011009 -
Viun5g03828 898 SUPERFAMILY L domain-like 378 484 - -
Viun5g03828 898 FunFam Leucine-rich repeat receptor-like protein kinase 563 664 - -
Viun5g03828 898 ProSitePatterns Protein kinases ATP-binding region signature. 596 617 IPR017441 GO:0005524
Viun5g03828 898 PANTHER OS07G0107800 PROTEIN-RELATED 36 863 - -
Viun5g03828 898 ProSitePatterns Serine/Threonine protein kinases active-site signature. 711 723 IPR008271 GO:0004672|GO:0006468
Viun5g03828 898 FunFam Leucine-rich repeat receptor-like kinase 371 503 - -
Viun5g03828 898 CDD STKc_IRAK 596 861 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03828 Viun-Chr5 46815200 46820476 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03828 10 898 Receptor kinase-like Gene Family AT2G19210 46.282 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Viun5g03828 Malectin_like 4.7e-105 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03828 - - vum:124830965 1194.1